View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14907_low_3 (Length: 691)
Name: NF14907_low_3
Description: NF14907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14907_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 143 - 673
Target Start/End: Original strand, 43450330 - 43450858
Alignment:
| Q |
143 |
tcaatgccacacgagagtttgtgaccttttgagagggaccctacccaattattttcgcaatcaacatgaatttgccagagaggatggttttt-cacttaa |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43450330 |
tcaatgccacacgagagtttgtgaccttttgagagggaccctacccaattattttcgcaatcaacatgaatttgccagagaggatggttttttcacttaa |
43450429 |
T |
|
| Q |
242 |
cttaggttatattattattactagattaatatacttgaatttaggagtatttgannnnnnnnnnnnnnnnnnnnnatattgagattcgaagctgactaaa |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| ||| |
|
|
| T |
43450430 |
cttaggttatattattattactagattaatatacttgaatgtaggagtatttgaattttatttttttt-------ataatgagattcgaagctgaccaaa |
43450522 |
T |
|
| Q |
342 |
tgctttctgctccccacatatgctttagatatgaccaactcaaaatcatttggaacatagatgaaggtcatatggaaaaagtatcctatagataannnnn |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
43450523 |
tgctttctgctccccacatatgctttagataggaccaactcaaaatcatttggaacatagatgaaggttatatggaaaaagtatcctatagataattttt |
43450622 |
T |
|
| Q |
442 |
nn--attttggaaatttgaactttttgacattgttgattggaattaacctatgatatatcatagcaagttataataaaatctttgtaaagttggaagctg |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43450623 |
ttttattttggaaatttgaactttttgacattgttgattggaattaacctatgatatatcatagcaagttataataaaatctttgtaaagttggaagctg |
43450722 |
T |
|
| Q |
540 |
gtagtgt--gtgtggaaaataagatacatggacaagtacaaatacaaatggcaaacatacaaatacgaagtacaattacaagaccatctaataatttcaa |
637 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43450723 |
gtagtgtgtgtgtggaaaataagatacatggacaagtacaaatacaaatggcaaacatacaaatacgaagtacaattacaagactatctaataatttcaa |
43450822 |
T |
|
| Q |
638 |
tttccaccgaattgttaggccatatatatgatggct |
673 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
43450823 |
tttccaccgaattgttaggccatatatatgatggct |
43450858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 43450206 - 43450293
Alignment:
| Q |
12 |
cataggctaaagagagatattgagggtgtgtgtgggtcttgccgttttttggtagcatttctttgcatcaaataataatagaaagtac |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43450206 |
cataggctaaagagagatattgagggtgtgtgtgggtcttgccgttttttggtagcatttctttgcatcaaataataatagaaagtac |
43450293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University