View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14907_low_4 (Length: 488)
Name: NF14907_low_4
Description: NF14907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14907_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 40 - 471
Target Start/End: Original strand, 22092168 - 22092599
Alignment:
| Q |
40 |
gatatgatgatcagagaatgaacaagttctattgaaatacctagctaaaccaggtagttttggtttctttgactgagtaagatggttttgtgcatcttca |
139 |
Q |
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| T |
22092168 |
gatatgatgatcagagaatgaacaagttgtattgaaatacctagctaaaccaggtagttttggtttctttgactgagtaagatggttttgtgcatcctca |
22092267 |
T |
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| Q |
140 |
tcctcataacttcttttctcaactttattgttcatggaactttccatttctagaaccttatccaatcccaatgaatatctaaatttagaaacttggtcta |
239 |
Q |
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| T |
22092268 |
tcatcataacttcttttctcaactttattgttcatggaactttccatttctagaaccttatccaatcccaatgaatatctaaatttagaaacttggtcta |
22092367 |
T |
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| Q |
240 |
ttcttaagataggttagtagttgttgcaccccagaaggttcccacagaagcagnnnnnnnntcttggaagtaaagaaaccttaaagtttgagttgataaa |
339 |
Q |
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| T |
22092368 |
ttcttaagataggttagtagttgttgcaccccagaaggttcccacagaagcagaaaaaaaatcttggaagtaaagaaaccttaaagtttgagttgataaa |
22092467 |
T |
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| Q |
340 |
cagaaacaaaagtaagaaaggttgtatgtatgttatgtttgttt-taggatgatgacaaaataatatggacagttgtttatttagtatagatctataagc |
438 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22092468 |
cagaaacaaaagtaagaaaggttgtatgtatg-tatgtttgtttgtaggatgatgacaaaataatatggacagttgtttatttagtatagatctataagc |
22092566 |
T |
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| Q |
439 |
atatgattttattaaaaatattaaaaaagggtg |
471 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
22092567 |
atatgattttattaaaaatattaaaaaagggtg |
22092599 |
T |
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