View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14907_low_5 (Length: 477)
Name: NF14907_low_5
Description: NF14907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14907_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 29634116 - 29634578
Alignment:
| Q |
1 |
acagctatactgttaaaaataaaggacatacagtgtaaacgccgacttcaatacaccgttctgctccaagaatctgcacaagcattgccagtagttgtgc |
100 |
Q |
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| T |
29634116 |
acagctatactgttaaaaataaaggacatacagtgtaaacgccgacttcaatacaccgttctgctccaagaatctgcacaagcattgccagtagttgtgc |
29634215 |
T |
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| Q |
101 |
ttgatcaggagacacctgttataaagacaatgtatcatcaacattttacttcatagaaggcaagtgggattacaatgtgcaagatgacagtacagataga |
200 |
Q |
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| T |
29634216 |
ttgatcaggagacacctgttataaagacaatgtatcatcaacattttacttcatagaaggcaagtgggattacaatgtgcaagatgacagtacagataga |
29634315 |
T |
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| Q |
201 |
aggaaaattagactgcgagtcnnnnnnnnnn--gtttgacagaagagactgtgagactgatatgcatgatttccagcacaatcatttatttcctccgcca |
298 |
Q |
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| T |
29634316 |
aggaaaattagactgcgagtcttttttttttttgtttgacagaagagactgtgagactgatatgcatgatttccagcacaatcatttatttcctccgcca |
29634415 |
T |
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| Q |
299 |
aatttcacaatttaaaactaaacgtataccagtatatgcgtagcatggacaagatattaagacagacaccaaaactaataaggtaattagcaatcaaata |
398 |
Q |
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| T |
29634416 |
aatttcacaatttaaaactaaacgtataccagtatatgcgtagcatggacaagatattaagacagacaccaaaactaataaggtaattagcaatcaaata |
29634515 |
T |
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| Q |
399 |
cacgagtcggtactgcaaaaaatgtatcttggacaagattttaagacagacacgagaactaat |
461 |
Q |
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| T |
29634516 |
cgcgagtcggtactgcaaaaaatgtatcttggacaagattttaagacagacacgaaaactaat |
29634578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 399
Target Start/End: Original strand, 29634545 - 29634603
Alignment:
| Q |
344 |
tggacaagatattaagacagacaccaaaactaataagg---taattagcaatcaaatac |
399 |
Q |
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| T |
29634545 |
tggacaagattttaagacagacacgaaaactaataacgtactaattagcaatcaaatac |
29634603 |
T |
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