View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14907_low_6 (Length: 460)
Name: NF14907_low_6
Description: NF14907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14907_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Complemental strand, 12643241 - 12642816
Alignment:
| Q |
18 |
aaatcactcaaactcatacactaattatgtatctgggannnnnnnnnnnnnnnnnnnttttacaacaacactatattttcattcacaaattgatttgcaa |
117 |
Q |
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| T |
12643241 |
aaatcactcaaactcatacactaattatgtatctgggaaagaagagagaagaagagattttacaacaacactatattttcattcacaaattgatttgcaa |
12643142 |
T |
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| Q |
118 |
tattgattcatgaaaggttattagcatagtcttttataggcttagttacttaatacttaagaaaagaaagtcttatatgcttagaaagtaaacggcggtg |
217 |
Q |
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| T |
12643141 |
tattgattcatgaaaggttattagcatagtcttttataggcttagttacttaatacttaagaaaagcaagtcttatatgcttagaaagtaaacggcggtg |
12643042 |
T |
|
| Q |
218 |
ctgcatcacggtgcttacaggatcatgagaccttaatgcctaagcaaaaaccttaatggctaaggataatacaacatttttctttggtccgaaaaacact |
317 |
Q |
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| T |
12643041 |
ctgcatcgcggtgcttacaggatcatgagaccttaatgcctaagcaaaaaccttaatggctaaggataatgcaacgtttttctttggtccgaaaaacact |
12642942 |
T |
|
| Q |
318 |
tcctatgctcagtgccattctcaattcttctagatagtttggtttaatatccaaaagagaaggatgaagcctcatgttgccactaccatgatcgctagta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12642941 |
tcctatgctcagtgccattctcaattcttctagatagtttggtttaatatccaaaagagaaggatgaagcctcatgttgccactaccatgatcgctagta |
12642842 |
T |
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| Q |
418 |
tcaaacaggtcaaattgctatcaaag |
443 |
Q |
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| T |
12642841 |
tcaaacaggtcaaattgctatcaaag |
12642816 |
T |
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