View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14908_low_1 (Length: 567)
Name: NF14908_low_1
Description: NF14908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14908_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-101; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 219 - 441
Target Start/End: Original strand, 30609302 - 30609525
Alignment:
| Q |
219 |
tgagcaattgttggtttttcttcaatctcctaaattgattttcaagcatgtttaatatcaaaatggtctaaagctaagatcgaaaataacaatgaaaagt |
318 |
Q |
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| T |
30609302 |
tgagcaattgttggtttttcttcaatctcctaaattgattttcaagcatgtttaatatcaaaatggtctaaagctaagatcgaaaataacaatgaaaaat |
30609401 |
T |
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| Q |
319 |
tagaaattaacctagggtaatatatagctctgatatcaaataatagaaatccacaattgatttgagttcttgt-nnnnnnnnctcttatcggtaagaaaa |
417 |
Q |
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| T |
30609402 |
tagaaattaacctagggtaatatatagctctgatatcaaataatagaaatccacaattgatttgagttcttgtaaaaaaaaactcttatcggtaagaaaa |
30609501 |
T |
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| Q |
418 |
atgttttataggacattaatacat |
441 |
Q |
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| T |
30609502 |
atgttttataggacattaatacat |
30609525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 30609083 - 30609235
Alignment:
| Q |
1 |
ttttgctagttgaattaaaactaaacatggaataaagtattcataaggcttcatgcgattaagttatagaaaatatataacatagttaaaatgatctttt |
100 |
Q |
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| T |
30609083 |
ttttgctagttgaactaaagctaatcatgcaataaagtattcataaggcttcatgcgattaagttatagaaaatatataacatagttaaaatgatctttg |
30609182 |
T |
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| Q |
101 |
gtcaattgtcacaaagttctcaattaatctcaatagaattacgaagggttggc |
153 |
Q |
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| T |
30609183 |
gtcaattgtcacaaagttctcaattaatctcaatagaattacgaagggttggc |
30609235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 444 - 548
Target Start/End: Original strand, 30609590 - 30609694
Alignment:
| Q |
444 |
tcataaatatatttgttaaacttcatgctatttttctttttaaggttatttacacttttaaatgaaattgtgtttcaactattactataaaaattgtgag |
543 |
Q |
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| T |
30609590 |
tcataaatatatttgttaaacttcattctatttttctttttaaggttatttacacttttaaatgaaattgtgtttcaactattattataaaaattgtgag |
30609689 |
T |
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| Q |
544 |
tatca |
548 |
Q |
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||||| |
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| T |
30609690 |
tatca |
30609694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 449
Target Start/End: Original strand, 30609551 - 30609585
Alignment:
| Q |
415 |
aaaatgttttataggacattaatacattatcataa |
449 |
Q |
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| T |
30609551 |
aaaatattttataggacattaatacattatcataa |
30609585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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