View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14908_low_3 (Length: 373)
Name: NF14908_low_3
Description: NF14908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14908_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 359
Target Start/End: Original strand, 6639690 - 6640036
Alignment:
| Q |
13 |
aatatttctcaggaaaaaactcatccaaacatgttccaaagccttaaagatattaattcaaaatacaaacaattatagtttcaacatatcatattgtgtg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6639690 |
aatatttctcaggaaaaaactcatccaaacatgttccaaagccttaaagatattaattcaaaatacaaacaattatagtttcaacatatcatattgtgtg |
6639789 |
T |
|
| Q |
113 |
taatatcttattgagtctacaagcatctaatcctcacaccacatatagcatgtccagcaactaaagattcctaatttctcttaatcttacagtttaaaca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6639790 |
taatatcttattgagtctacaagcatctaatcctcacaccacatatagcatgtccagcaactaaagattcctaatttctcttaatcttacagtttaaaca |
6639889 |
T |
|
| Q |
213 |
tctagaatgttagaaaagttaactccaggatataataatgtacacgaaaatacttgaaccaatttatccatttttcatgcttcggatgtctgcatcgtca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
6639890 |
tctagaatgttagaaaagttaactccaggatataataatgtacacgaaaatagttgaaccaatttatccatttttcatgcttcggatgtttgtatcgtca |
6639989 |
T |
|
| Q |
313 |
aattgttgaaccaatttgtatattttgagtctactacatgtgttttt |
359 |
Q |
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| T |
6639990 |
aattgttgaaccaatttgtatattttgagtctactacatgtgttttt |
6640036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 31714977 - 31714918
Alignment:
| Q |
17 |
tttctcaggaaaaaactcatccaaacatgttccaaagccttaaagatattaattcaaaat |
76 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
31714977 |
tttctcaggaaaaaactcatccaaacatgttccgaaaccttaaagatattaattcaaaat |
31714918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 12316813 - 12316678
Alignment:
| Q |
17 |
tttctcaggaaaaaactcatccaaacatgttccaaagccttaaagatatt--aattcaaaatacaaacaattatagtttcaacatatcatattgtgtgta |
114 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
12316813 |
tttctcaggaaaaa-ctcatccaaacatgttccaaagccttaaagatattttaattcaaaatacaaactattatagtttcaacatatcat---------- |
12316725 |
T |
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| Q |
115 |
atatcttattgagtctacaagcatctaatcctcacaccacatatagcatgtcca |
168 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12316724 |
-------attgagtctacaagcatctaatcctcacaccacatatagcatgtcca |
12316678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 159 - 262
Target Start/End: Original strand, 499573 - 499673
Alignment:
| Q |
159 |
agcatgtccagcaactaaagattcctaatttctcttaatcttacagtttaaacatctagaatgttagaaaagttaactccaggatataataatgtacacg |
258 |
Q |
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|
|||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
499573 |
agcaagtccatcaactaaagattcctaatttctcttaatcttacattttaaacatctagaatgttagaaaagttaactccagaatataa---tgtacacg |
499669 |
T |
|
| Q |
259 |
aaaa |
262 |
Q |
| |
|
|||| |
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|
| T |
499670 |
aaaa |
499673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 499482 - 499570
Alignment:
| Q |
17 |
tttctcaggaaaaaactcatccaaacatgttccaaagccttaaagatatt-aattcaaaatacaaacaattatagtttcaacatatcatat |
106 |
Q |
| |
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|||||||||||||| ||||||||||||| ||||||||||| || |||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
499482 |
tttctcaggaaaaa-ctcatccaaacattttccaaagcctgaa-gatatttaattcaaaatacaaactattatagtttcaacatatcatat |
499570 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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