View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14908_low_4 (Length: 324)
Name: NF14908_low_4
Description: NF14908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14908_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 41760858 - 41760725
Alignment:
| Q |
18 |
aagaagatcatgg-ttttgttgcttaaatcaaaccatgattaaatgccgtctagcatcaattctaagatcttctttcatctttctaatgaaatcttcaaa |
116 |
Q |
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| T |
41760858 |
aagaagatcatgggttttgttgcttaaatcaaaccatgattaaatgccgtctagcatcaattctaagatcttctttcatctttctaatgaaatcttcaaa |
41760759 |
T |
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| Q |
117 |
ttttttgtttaactcttcagtacttagcacacaa |
150 |
Q |
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| T |
41760758 |
ttttttgtttaactcttctgtacttagcacacaa |
41760725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 41795625 - 41795516
Alignment:
| Q |
39 |
cttaaatcaaaccatgattaaatgccgtctagcatcaattctaagatcttctttcatctttctaatgaaatcttcaaattttttgtttaactcttcagta |
138 |
Q |
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| T |
41795625 |
cttaaatcaaaccatgactaaatgccgtctagcatcaattcttagatcttctttcatctttctaatgaaatcttcgaattttttgtttaactcttctgta |
41795526 |
T |
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| Q |
139 |
cttagcacac |
148 |
Q |
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|||| ||||| |
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| T |
41795525 |
cttaacacac |
41795516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 219 - 294
Target Start/End: Complemental strand, 41795457 - 41795382
Alignment:
| Q |
219 |
aattagaatgtaatcaatttccgacaatttatctccatcttcatcatctgcatcaaatagttcaacttcttcttct |
294 |
Q |
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| T |
41795457 |
aattagaatgtaatcaatttccgaccctttatctccgtcttcatcatctgcatcaaatagttcaacttcttcttct |
41795382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 41760656 - 41760584
Alignment:
| Q |
219 |
aattagaatgtaatcaatttccgacaatttatctccatcttcatcatctgcatcaaatagttcaacttcttct |
291 |
Q |
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| T |
41760656 |
aattagaatgtaatcaatttccgacaatttatctccctcatcatcatgtgcatcaaatagttcaacttcttct |
41760584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 23507455 - 23507400
Alignment:
| Q |
91 |
ttcatctttctaatgaaatcttcaaattttttgtttaactcttcagtacttagcac |
146 |
Q |
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| T |
23507455 |
ttcatctttttaatgaagtcatcaaattttttgttcaactcctcagtgcttagcac |
23507400 |
T |
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