View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14909_low_2 (Length: 426)
Name: NF14909_low_2
Description: NF14909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14909_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 86 - 410
Target Start/End: Original strand, 1046072 - 1046396
Alignment:
| Q |
86 |
aggtcggaattgaatttttgttacagaatgatattgatttatgttcactagtttaattacaaatttacatgtatgcattctacacatttattatacacat |
185 |
Q |
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| T |
1046072 |
aggtaggaattgaatttttgttacagaatgatattgatttatgttcactagtttaattacaaatttacatgtatgtattctacacatttattatacacat |
1046171 |
T |
|
| Q |
186 |
gtaatattgtattctcattttccatataattctaaccagtttatcaagcaaatggacaagcaccaatatcttcttcagacaaactactcacaccacgaat |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1046172 |
gtaatattgtattctcattttccatataattctaaccagtttatcaaccaaatggacaagcaccaatatcttctacagacaaactactcacaccacgaat |
1046271 |
T |
|
| Q |
286 |
tggaggcgatggtattgaaatatcacaattcacaccaccaaggaggctaagatcagaagaaattcctaatattgtcaatgactttagacttgctgcaaga |
385 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1046272 |
tggaggcaatggtattgaaatatcacaattcacaccaccaaggaggctaagatcagaagaaattcctaatattgtcaatgactttagacttgctgcaaga |
1046371 |
T |
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| Q |
386 |
aatgctattgaagctggtaacttca |
410 |
Q |
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| T |
1046372 |
aatgctattgaagctggtaacttca |
1046396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 222 - 411
Target Start/End: Original strand, 1052868 - 1053057
Alignment:
| Q |
222 |
cagtttatcaagcaaatggacaagcaccaatatcttcttcagacaaactactcacaccacgaattggaggcgatggtattgaaatatcacaattcacacc |
321 |
Q |
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| T |
1052868 |
cagtttgtcaaccaaatgggcaagcaccaatatcttcaacaaacaaactactcacaccacaaattggaggtgatggttttcaaatgccacaattcacaca |
1052967 |
T |
|
| Q |
322 |
accaaggaggctaagatcagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaacttcat |
411 |
Q |
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| T |
1052968 |
accgaggaggctaagaacagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaaattcat |
1053057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 191 - 408
Target Start/End: Original strand, 1070976 - 1071193
Alignment:
| Q |
191 |
attgtattctcattttccatataattctaaccagtttatcaagcaaatggacaagcaccaatatcttcttcagacaaactactcacaccacgaattggag |
290 |
Q |
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| T |
1070976 |
attgtatgctaattttccatgttattctcaacagtttatcagccaaatgggcaagcaccaatatcttctacagacaagccactaaaaccacaaattcgaa |
1071075 |
T |
|
| Q |
291 |
gcgatggtattgaaatatcacaattcacaccaccaaggaggctaagatcagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgc |
390 |
Q |
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| T |
1071076 |
gtaatggtattgatgttgcaaaattcacaccaccaaggcggctaaggacagatgaaattccaaacattgtcaatgacttcagactcgctgcaagaaatgc |
1071175 |
T |
|
| Q |
391 |
tattgaagctggtaactt |
408 |
Q |
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|||||||||||||||||| |
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| T |
1071176 |
tattgaagctggtaactt |
1071193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 234 - 408
Target Start/End: Original strand, 1065280 - 1065454
Alignment:
| Q |
234 |
caaatggacaagcaccaatatcttcttcagacaaactactcacaccacgaattggaggcgatggtattgaaatatcacaattcacaccaccaaggaggct |
333 |
Q |
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|||||||||| ||||||||||| ||| ||||||| ||||||||||| |||| || | ||||| || | || || |||||||||| || || |||| |
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| T |
1065280 |
caaatggacaggcaccaatatcatctacagacaagtcactcacaccacaaattcgaagtaatggttttaatattgcaaaattcacaccgcctagacggct |
1065379 |
T |
|
| Q |
334 |
aagatcagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaactt |
408 |
Q |
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| T |
1065380 |
aaggacagatgaaattcctaacattgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaactt |
1065454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 236 - 406
Target Start/End: Original strand, 1058218 - 1058388
Alignment:
| Q |
236 |
aatggacaagcaccaatatcttcttcagacaaactactcacaccacgaattggaggcgatggtattgaaatatcacaattcacaccaccaaggaggctaa |
335 |
Q |
| |
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|||||||| |||||||||||| || ||||||| | ||||||||||| | || || | |||||||||| | || |||||||||| || || |||||| |
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| T |
1058218 |
aatggacaggcaccaatatctcctacagacaagccactcacaccacaacttcgaagtaatggtattgatgtcgcagaattcacaccgcccagacggctaa |
1058317 |
T |
|
| Q |
336 |
gatcagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaac |
406 |
Q |
| |
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| ||| |||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1058318 |
ggatagatgaaattccaaaccttgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaac |
1058388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 312 - 405
Target Start/End: Original strand, 1033360 - 1033453
Alignment:
| Q |
312 |
aattcacaccaccaaggaggctaagatcagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa |
405 |
Q |
| |
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||||| ||||||| || |||||||| |||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
1033360 |
aattctcaccaccgagaaggctaaggacagatgaaattcctaatattgtaaatgacttcagactcgctgcaagaaatgctattgaagctggtaa |
1033453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 330 - 405
Target Start/End: Original strand, 1043770 - 1043845
Alignment:
| Q |
330 |
ggctaagatcagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa |
405 |
Q |
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||||||| |||| ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
1043770 |
ggctaagcacagatgaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaa |
1043845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 1045998 - 1046046
Alignment:
| Q |
11 |
taattctggtatgcatttagtttaatcaaattagcaattaactaacaaa |
59 |
Q |
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| T |
1045998 |
taattctggtatgcatttagtttaatcaaattagcaattaactaacaaa |
1046046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 1050993 - 1051077
Alignment:
| Q |
235 |
aaatggacaagcaccaatatcttcttcagacaaactactcacaccacgaattggaggcgatggtattgaaatatcacaattcaca |
319 |
Q |
| |
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||||||||||| ||||| ||||||| || ||| ||||| ||||||| ||||||||| |||| | |||||||||||||||||||| |
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| T |
1050993 |
aaatggacaagaaccaacatcttctgcaagcaagctacttacaccacaaattggaggtgatgctgttgaaatatcacaattcaca |
1051077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 405
Target Start/End: Complemental strand, 1641280 - 1641080
Alignment:
| Q |
205 |
ttccatataattctaaccagtttatcaagcaaatggacaagcaccaatatcttcttcagacaaactactcacaccacgaattggaggcgatggtattgaa |
304 |
Q |
| |
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|||||||| ||||| | ||| ||||||| ||||||| || ||||||||||||||| | ||| ||||| ||||| || | || || |||| ||||| |
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| T |
1641280 |
ttccatattattctgaacaggttatcaaccaaatgggcaggcaccaatatcttctactaacatgtcactcaaaccacaaactcgaagcaatggcattgat |
1641181 |
T |
|
| Q |
305 |
atatcacaattcacaccaccaaggaggctaagatcagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggta |
404 |
Q |
| |
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||| | | ||||||||||||||| | ||||| | ||||||||| ||| ||||||||||| |||||||||||||| |||||||| | |||||||| |
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| T |
1641180 |
atagctaagttcacaccaccaaggcgcctaaggacctgtgaaattcctcgtatcgtcaatgacttcagacttgctgcaaggaatgctatagcagctggta |
1641081 |
T |
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| Q |
405 |
a |
405 |
Q |
| |
|
| |
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|
| T |
1641080 |
a |
1641080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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