View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14909_low_3 (Length: 247)
Name: NF14909_low_3
Description: NF14909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14909_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 119 - 242
Target Start/End: Complemental strand, 37001967 - 37001844
Alignment:
| Q |
119 |
gacaggtgtgcttccatacaagcaatcgagactgattccagtgcgaaaactaaggatttgatctcatattggatgcttctttccttaatttacctctttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37001967 |
gacaggtgtgcttccatacaagcaatcgagactgattccagtgcgaaaactaaggatttgatctcatattggatgcttctttccttaatttacctctttg |
37001868 |
T |
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| Q |
219 |
agtatgcttttatggattttcttc |
242 |
Q |
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| T |
37001867 |
agtatgcttttatggattttcttc |
37001844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 36982610 - 36982497
Alignment:
| Q |
119 |
gacaggtgtgcttccatacaagcaatcgagactgattccagtgcgaaaactaaggatttgatctcatattggatgcttctttccttaatttacctctttg |
218 |
Q |
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||||||||||||||| |||||||||| || ||||| ||| ||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
36982610 |
gacaggtgtgcttccgtacaagcaattgaaactgactcctatgcagaaactaaggatttgatctcatattggatacttctctccttaatttacctctttg |
36982511 |
T |
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| Q |
219 |
agtatgcttttatg |
232 |
Q |
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| T |
36982510 |
aatatgcttttatg |
36982497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 36998070 - 36997957
Alignment:
| Q |
119 |
gacaggtgtgcttccatacaagcaatcgagactgattccagtgcgaaaactaaggatttgatctcatattggatgcttctttccttaatttacctctttg |
218 |
Q |
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||||||| |||||| ||| ||||||||||||||||||| ||| |||||| ||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
36998070 |
gacaggtttgcttctgtactagcaatcgagactgattcctatgcagaaactacggatttgatctcatattggatacttctttcattaatttacctctttg |
36997971 |
T |
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| Q |
219 |
agtatgcttttatg |
232 |
Q |
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|||||||||||||| |
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| T |
36997970 |
agtatgcttttatg |
36997957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 36989077 - 36988965
Alignment:
| Q |
120 |
acaggtgtgcttccatacaagcaatcgagactgattccagtgcgaaaactaaggatttgatctcatattggatgcttctttccttaatttacctctttga |
219 |
Q |
| |
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|||||||||||||||||||||| |||||||| ||||| ||| ||| |||| || | |||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
36989077 |
acaggtgtgcttccatacaagctatcgagaccgattctgatgcagaaattaagaatataatctcatattggatacttctttcattaatttacctatttga |
36988978 |
T |
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| Q |
220 |
gtatgcttttatg |
232 |
Q |
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||||||||||||| |
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| T |
36988977 |
gtatgcttttatg |
36988965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 37002085 - 37002051
Alignment:
| Q |
1 |
tatgtaagttcttgctcttagtgtttggtgtattg |
35 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
37002085 |
tatgtaagttcttgctcttagtgtttggtgtattg |
37002051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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