View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_high_19 (Length: 346)
Name: NF1490_high_19
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 6300129 - 6299794
Alignment:
| Q |
1 |
tttgtagtccagtttcatcttcaggctatgttcaacatcagagaaatcccaaatcaaaaagtggtccaattgtgccacaaggaacaacttactactccaa |
100 |
Q |
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| T |
6300129 |
tttgtagtccagtttcatcttcaggctatgttcaacatcagagaaatcccaaatcaaaaagtggtccaattgtgccacaaggaacaacttactactccaa |
6300030 |
T |
|
| Q |
101 |
tttttcgcctacaattccactgcgaaatggtttggtggtgaaaaacttaatgatgagttctccttttacaactggtgtgttagcaccagatattgtttct |
200 |
Q |
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| T |
6300029 |
tttttcgcctacaattccactgcgaaatggtttggtggtgaaaaacttaatgatgagttctccttttacaactggtgtgttagcaccggatattgtttct |
6299930 |
T |
|
| Q |
201 |
cttcaacattattatccacatgacaatttgtatggtgcacgttatgacattgatgatgatagttcagtggttaatgagaatggtgttgctcatacatctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6299929 |
cttcaacattattatccacatgacaatttgtatggtgcacgttatgacattgatgatgatagttcagtggttaatgagaacggtgttgctcatacatctg |
6299830 |
T |
|
| Q |
301 |
cgtcgaacgcgccttcgtggtcagaacttctctctg |
336 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6299829 |
cgtcgaacgcgccttcgtggtcagaacttctctctg |
6299794 |
T |
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