View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_high_2 (Length: 627)
Name: NF1490_high_2
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 184 - 613
Target Start/End: Complemental strand, 10367986 - 10367560
Alignment:
| Q |
184 |
ctctttcagctattagggtggctagccgcgtcaccttttattttggcaagtctttacctgacgttgataccgtgcttcaaacttctagttaacaaactca |
283 |
Q |
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| T |
10367986 |
ctctttcagctattagggtggctagccgcgtcaccttttattttggcaagtctttacctgacgttgataccgtgcttcaaacttctagttaacaaactca |
10367887 |
T |
|
| Q |
284 |
acagtcctccttcgagtccaaagatgccgctccaaccgcgccctgaagttgggttaagggtaagggatatctgatgatagccacttcatatgcgctcatc |
383 |
Q |
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| T |
10367886 |
acagtcctccttcgagtccaaagatgccgctccaaccgcgccctgaagttgggttgagggtaagggatatctgatgatagccacttcatatgcgctcatc |
10367787 |
T |
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| Q |
384 |
gagagtgatcagtcattcaaacgttgtcttgttgagttgtttctgactgaaacaacatatatagatatacgaaaagactagtcaatttagcgacgatgta |
483 |
Q |
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| T |
10367786 |
gagagtgatcagtcattcaaacattgtcttgttgaattgtttctgactgaaacaacatatatagatatacaaaaagactagtcaatttagtgacaatgta |
10367687 |
T |
|
| Q |
484 |
aaaagttatacacatgtattcgatatggaccagtcactcttaagtggttgatttctctaaagatgtacagaactgtctcatgtatgataacccttgaggg |
583 |
Q |
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| T |
10367686 |
aaaagttatacacatgtattcgatatggacc---gactcttaagtggttgatttctctaaagatgtacagaactgtctcatgtatggtaacccttgaggg |
10367590 |
T |
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| Q |
584 |
ttcacagttcaattatgttttagtttggcc |
613 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
10367589 |
ttcacagttcaattatgttttagtttggcc |
10367560 |
T |
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