View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1490_high_20 (Length: 344)

Name: NF1490_high_20
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1490_high_20
NF1490_high_20
[»] chr6 (5 HSPs)
chr6 (1-326)||(31108952-31109274)
chr6 (176-315)||(27441601-27441736)
chr6 (178-311)||(33242466-33242595)
chr6 (177-326)||(33253961-33254107)
chr6 (275-317)||(21279986-21280028)
[»] chr3 (10 HSPs)
chr3 (175-314)||(4190170-4190305)
chr3 (176-315)||(10457798-10457933)
chr3 (205-317)||(34791886-34791994)
chr3 (202-326)||(9434172-9434292)
chr3 (229-311)||(25996331-25996413)
chr3 (172-300)||(51757667-51757790)
chr3 (233-313)||(52627936-52628016)
chr3 (275-315)||(51249367-51249407)
chr3 (275-317)||(53581859-53581901)
chr3 (173-247)||(19148895-19148965)
[»] chr1 (13 HSPs)
chr1 (172-315)||(35003353-35003492)
chr1 (202-311)||(45705888-45705993)
chr1 (175-315)||(38335977-38336113)
chr1 (204-315)||(48119687-48119794)
chr1 (178-317)||(35000021-35000156)
chr1 (178-315)||(45639640-45639773)
chr1 (177-326)||(45427652-45427797)
chr1 (175-315)||(26585521-26585657)
chr1 (202-326)||(44112725-44112845)
chr1 (195-315)||(46168442-46168558)
chr1 (202-311)||(38113127-38113232)
chr1 (196-311)||(41065216-41065325)
chr1 (275-318)||(750306-750349)
[»] chr7 (10 HSPs)
chr7 (174-315)||(31513346-31513483)
chr7 (174-315)||(31408537-31408674)
chr7 (177-326)||(40236967-40237112)
chr7 (174-326)||(33384919-33385067)
chr7 (176-311)||(27535137-27535268)
chr7 (275-317)||(5810925-5810967)
chr7 (275-317)||(43317500-43317542)
chr7 (275-317)||(43343625-43343667)
chr7 (275-317)||(44416935-44416977)
chr7 (275-315)||(5194232-5194272)
[»] chr4 (12 HSPs)
chr4 (178-315)||(55272284-55272417)
chr4 (205-315)||(17619087-17619193)
chr4 (202-311)||(38851576-38851681)
chr4 (177-311)||(19880017-19880147)
chr4 (202-315)||(712019-712128)
chr4 (202-315)||(35037064-35037173)
chr4 (178-326)||(48435487-48435631)
chr4 (196-317)||(960796-960913)
chr4 (175-304)||(32728427-32728552)
chr4 (193-317)||(36004040-36004159)
chr4 (171-310)||(46827607-46827742)
chr4 (275-326)||(28988521-28988572)
[»] chr2 (18 HSPs)
chr2 (172-326)||(41281876-41282026)
chr2 (168-311)||(18491768-18491907)
chr2 (174-310)||(12531567-12531699)
chr2 (174-326)||(34895645-34895793)
chr2 (171-326)||(43114605-43114756)
chr2 (200-317)||(4451880-4451993)
chr2 (202-326)||(11825586-11825706)
chr2 (202-310)||(966766-966870)
chr2 (178-326)||(16804016-16804160)
chr2 (178-326)||(16843298-16843442)
chr2 (202-311)||(4299352-4299457)
chr2 (202-326)||(12415392-12415512)
chr2 (202-326)||(12427452-12427572)
chr2 (196-314)||(14285736-14285850)
chr2 (275-317)||(13780736-13780778)
chr2 (174-262)||(6518398-6518482)
chr2 (280-317)||(42849864-42849901)
chr2 (275-311)||(34817777-34817813)
[»] scaffold0003 (1 HSPs)
scaffold0003 (176-315)||(45625-45760)
[»] chr5 (3 HSPs)
chr5 (196-311)||(17208137-17208248)
chr5 (202-317)||(32473326-32473437)
chr5 (178-315)||(30622627-30622760)
[»] chr8 (10 HSPs)
chr8 (178-311)||(10678060-10678189)
chr8 (202-326)||(35181564-35181684)
chr8 (176-326)||(34304836-34304981)
chr8 (229-310)||(19386520-19386601)
chr8 (196-313)||(16358759-16358872)
chr8 (205-317)||(18066653-18066761)
chr8 (235-311)||(16603587-16603663)
chr8 (196-317)||(33629919-33630036)
chr8 (275-317)||(29705419-29705461)
chr8 (275-317)||(40528635-40528677)
[»] scaffold0100 (1 HSPs)
scaffold0100 (196-326)||(35382-35508)


Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 31108952 - 31109274
Alignment:
Q  1 actatcatttgctctttgttttcatatgaatatattacaatgtcattaaattggatgttcaaaatcatagattggtcaatgtaatttgcgcaattgaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31108952 actatcatttgctctttgttttcatatgaatatattacaatgttattaaattggatgttcaaaatcatagattggtcaatgtcatttgcgcaattgaaaa 31109051  T
Q  101 taaggagatcaaaactgtggttttgttcnnnnnnnnn-ggacgagagctgtattaaagcctctaatgtatataaaaaagagtgttgacacatgtgtaccc 199  Q
    ||||||||||||||||| |||||||| |          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31109052 taaggagatcaaaactgcggttttgtccaaaaaaaaaaggacgagagctgtattaaagcctctaatgtatataaaaaagagtgttgacacatgtgcaccc 31109151  T
Q  200 ctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatga 299  Q
    |||||||||||||||||||||||||    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| || |||    
T  31109152 ctatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaagagggagaggagatgaaagagaaaatgtggtcgtaagttga 31109247  T
Q  300 atttatcaaaatatccctggtgcatgg 326  Q
    |||||||||||||||||| ||||||||    
T  31109248 atttatcaaaatatccctagtgcatgg 31109274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 315
Target Start/End: Complemental strand, 27441736 - 27441601
Alignment:
Q  176 aagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaa 275  Q
    ||||||| ||| ||||||  || || |||||||||||||||||||||||    ||||| |||||||||||||| ||||||||| ||||||||||||||||    
T  27441736 aagagtggtgatacatgtacacacccatgtggcaatacacctcttacac----ccacataaaatcctgacatgtggcaaggaaaagggagaggagatgaa 27441641  T
Q  276 agagaaagtgtggtcgtgagatgaatttatcaaaatatcc 315  Q
    ||||||||| |||| |||||||||||||| ||||||||||    
T  27441640 agagaaagtatggttgtgagatgaatttaccaaaatatcc 27441601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 178 - 311
Target Start/End: Complemental strand, 33242595 - 33242466
Alignment:
Q  178 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaag 277  Q
    ||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  33242595 gagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaag 33242500  T
Q  278 agaaagtgtggtcgtgagatgaatttatcaaaat 311  Q
    ||||||| || | |||||||||||||| ||||||    
T  33242499 agaaagtatgtttgtgagatgaatttaccaaaat 33242466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 177 - 326
Target Start/End: Complemental strand, 33254107 - 33253961
Alignment:
Q  177 agagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatg-aa 275  Q
    |||||| ||| ||||||  ||| | |||||||||||||||| ||| ||    ||||||||||||| |||||| ||||| ||| |||||||||||||| ||    
T  33254107 agagtggtgatacatgtacacctccatgtggcaatacaccttttatac----ccacacaaaatccggacatgtggcaaagaaaagggagaggagatgaaa 33254012  T
Q  276 agagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatgg 326  Q
    ||| ||||| || | |||||||||||||| ||| || |||||  |||||||    
T  33254011 agataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatgg 33253961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 21280028 - 21279986
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccct 317  Q
    |||| |||||||||| |||||||||||||| ||||||||||||    
T  21280028 aagataaagtgtggttgtgagatgaatttaccaaaatatccct 21279986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 175 - 314
Target Start/End: Original strand, 4190170 - 4190305
Alignment:
Q  175 aaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatga 274  Q
    |||||||| ||| |||||| ||||| ||||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||| |||||||||    
T  4190170 aaagagtggtgatacatgtatacccttatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggaaaggagatga 4190265  T
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatc 314  Q
    |||||||||| |||| |||||||||||||| |||||||||    
T  4190266 aagagaaagtatggttgtgagatgaatttaccaaaatatc 4190305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 176 - 315
Target Start/End: Original strand, 10457798 - 10457933
Alignment:
Q  176 aagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaa 275  Q
    ||||||||||| |||||| |||||  ||||||||||||||||||||||    ||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  10457798 aagagtgttgatacatgtataccctcatgtggcaatacacctcttaca----tccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaa 10457893  T
Q  276 agagaaagtgtggtcgtgagatgaatttatcaaaatatcc 315  Q
    ||||||||| |||| ||||||| |||||| ||||||||||    
T  10457894 agagaaagtatggttgtgagataaatttaccaaaatatcc 10457933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 205 - 317
Target Start/End: Complemental strand, 34791994 - 34791886
Alignment:
Q  205 tggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaattta 304  Q
    |||||||||||||||||||    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| |||||||||| |||    
T  34791994 tggcaatacacctcttaca----tccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaaatta 34791899  T
Q  305 tcaaaatatccct 317  Q
    | ||||| |||||    
T  34791898 ttaaaatgtccct 34791886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 202 - 326
Target Start/End: Complemental strand, 9434292 - 9434172
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    |||||||||||||||||||||||    ||||||||||| |||||||| ||||||||| || |||||||||||||||||||||| |||| ||||||||||     
T  9434292 atgtggcaatacacctcttacac----ccacacaaaattctgacatgtggcaaggaaaagtgagaggagatgaaagagaaagtatggttgtgagatgaaa 9434197  T
Q  302 ttatcaaaatatccctggtgcatgg 326  Q
    ||| |||||| |||||  |||||||    
T  9434196 ttaccaaaatgtccctaatgcatgg 9434172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 25996413 - 25996331
Alignment:
Q  229 ccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaatttatcaaaat 311  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||| | |||| |||||||||||||| ||||||    
T  25996413 ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaagagaaaatatggttgtgagatgaatttaccaaaat 25996331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 172 - 300
Target Start/End: Complemental strand, 51757790 - 51757667
Alignment:
Q  172 aaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggaga 271  Q
    ||||| ||||| ||| ||||||  ||||| ||||||||||| |||||||||||    ||||||| |||||||||||| ||||||||| ||| ||||||||    
T  51757790 aaaaatgagtggtgatacatgtacacccc-atgtggcaatatacctcttacac----ccacacacaatcctgacatgtggcaaggaaaaggaagaggaga 51757696  T
Q  272 tgaaagagaaagtgtggtcgtgagatgaa 300  Q
    ||||||||||||| |||| ||||||||||    
T  51757695 tgaaagagaaagtatggttgtgagatgaa 51757667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 313
Target Start/End: Original strand, 52627936 - 52628016
Alignment:
Q  233 acaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaatttatcaaaatat 313  Q
    |||||||||||||||| ||| ||||| |||||||| |||||||||||||||| || | |||||||||||||| ||||||||    
T  52627936 acaaaatcctgacatgtggccaggaaaagggagagaagatgaaagagaaagtatgattgtgagatgaatttaccaaaatat 52628016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 51249407 - 51249367
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatcc 315  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  51249407 aagagaaagtgtggttgtgagatgaatttaccaaaatatcc 51249367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 53581859 - 53581901
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccct 317  Q
    |||| |||||||||| |||||||||| ||||||||||||||||    
T  53581859 aagataaagtgtggttgtgagatgaacttatcaaaatatccct 53581901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 19148965 - 19148895
Alignment:
Q  173 aaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacat 247  Q
    ||||||| || ||||||||||  ||||| ||||||||||||||| |||||||    ||||||||||| |||||||    
T  19148965 aaaaagaatggtgacacatgtacacccccatgtggcaatacaccacttacac----ccacacaaaattctgacat 19148895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 172 - 315
Target Start/End: Complemental strand, 35003492 - 35003353
Alignment:
Q  172 aaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggaga 271  Q
    ||||||||||| ||| |||||   ||||| |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||||||    
T  35003492 aaaaaagagtggtgatacatgcacacccccatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggaga 35003397  T
Q  272 tgaaagagaaagtgtggtcgtgagatgaatttatcaaaatatcc 315  Q
    ||||||||||||| |||| |||||||||||||| ||||||||||    
T  35003396 tgaaagagaaagtatggttgtgagatgaatttaccaaaatatcc 35003353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 202 - 311
Target Start/End: Complemental strand, 45705993 - 45705888
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| |||||||||||    
T  45705993 atgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaat 45705898  T
Q  302 ttatcaaaat 311  Q
    ||||||||||    
T  45705897 ttatcaaaat 45705888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 175 - 315
Target Start/End: Complemental strand, 38336113 - 38335977
Alignment:
Q  175 aaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatga 274  Q
    |||||||| ||| || |||  |||||||||||||||||||||||||| |    | ||||||||||||||||||| ||||||||| |||||||||||||||    
T  38336113 aaagagtggtgatacttgtacacccctatgtggcaatacacctcttata----ttcacacaaaatcctgacatgtggcaaggaaaagggagaggagatga 38336018  T
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatcc 315  Q
    |||||||||| |||| |||||||||||||| ||||||||||    
T  38336017 aagagaaagtatggttgtgagatgaatttaccaaaatatcc 38335977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 204 - 315
Target Start/End: Complemental strand, 48119794 - 48119687
Alignment:
Q  204 gtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaattt 303  Q
    |||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| |||||||||||||    
T  48119794 gtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaattt 48119699  T
Q  304 atcaaaatatcc 315  Q
    | ||||||||||    
T  48119698 accaaaatatcc 48119687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 178 - 317
Target Start/End: Original strand, 35000021 - 35000156
Alignment:
Q  178 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaag 277  Q
    ||||| ||| ||||||  ||||| ||||||||||||| ||||||||| |||    |||||||||||||||| ||||||||| ||||||||||||||||||    
T  35000021 gagtggtgatacatgtacacccccatgtggcaatacatctcttacacccat----acaaaatcctgacatgtggcaaggaaaagggagaggagatgaaag 35000116  T
Q  278 agaaagtgtggtcgtgagatgaatttatcaaaatatccct 317  Q
    ||||||| |||| ||||||| ||||||||||||| |||||    
T  35000117 agaaagtatggttgtgagataaatttatcaaaatgtccct 35000156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 178 - 315
Target Start/End: Original strand, 45639640 - 45639773
Alignment:
Q  178 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaag 277  Q
    ||||| ||| ||||||  |||||  ||||||||||||||||||||||    |||||||||||||| ||||| ||||||||| ||||||||||||||||||    
T  45639640 gagtggtgatacatgtacacccccttgtggcaatacacctcttacac----ccacacaaaatcctaacatgtggcaaggaaaagggagaggagatgaaag 45639735  T
Q  278 agaaagtgtggtcgtgagatgaatttatcaaaatatcc 315  Q
    ||||||| || | |||||||||||||| ||||||||||    
T  45639736 agaaagtatgattgtgagatgaatttaccaaaatatcc 45639773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 177 - 326
Target Start/End: Original strand, 45427652 - 45427797
Alignment:
Q  177 agagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaa 276  Q
    |||||| ||| ||||||  | ||| |||||||||||||||||||     ||||||||||||||||||||||| || |||||| |||||||||||||||||    
T  45427652 agagtggtgatacatgtacatccccatgtggcaatacacctctt----ccatccacacaaaatcctgacatgtggtaaggaaaagggagaggagatgaaa 45427747  T
Q  277 gagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatgg 326  Q
    |||||||| |||| |||||||||| ||| |||||| |||||  |||||||    
T  45427748 gagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatgg 45427797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 175 - 315
Target Start/End: Complemental strand, 26585657 - 26585521
Alignment:
Q  175 aaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatga 274  Q
    |||||||| ||| ||||||  ||||| ||| ||||||||| ||||||||    ||||||||||||||||||||| ||||||||| |||||||||||||||    
T  26585657 aaagagtggtgatacatgtacacccccatgcggcaatacatctcttaca----tccacacaaaatcctgacatgtggcaaggaaaagggagaggagatga 26585562  T
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatcc 315  Q
    |||||||||| || | | ||||||||||||  |||||||||    
T  26585561 aagagaaagtatgattgcgagatgaatttactaaaatatcc 26585521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 202 - 326
Target Start/End: Complemental strand, 44112845 - 44112725
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    |||||||||||||||||||||||    ||||||||||| |||||||| ||||||||| || |||||||||||||||||||||| |||| ||||||||||     
T  44112845 atgtggcaatacacctcttacac----ccacacaaaattctgacatgtggcaaggaaaagtgagaggagatgaaagagaaagtatggttgtgagatgaaa 44112750  T
Q  302 ttatcaaaatatccctggtgcatgg 326  Q
    ||| |||||| |||||  |||||||    
T  44112749 ttaccaaaatgtccctaatgcatgg 44112725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 195 - 315
Target Start/End: Complemental strand, 46168558 - 46168442
Alignment:
Q  195 tacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtga 294  Q
    |||||| ||||||||||||| |||||||||    |||||||||||  ||||||| |||||| || ||||||||||||||||||||||||| |||| ||||    
T  46168558 tacccccatgtggcaatacatctcttacac----ccacacaaaattatgacatgtggcaagaaaaagggagaggagatgaaagagaaagtatggttgtga 46168463  T
Q  295 gatgaatttatcaaaatatcc 315  Q
    |||||||||| ||||||||||    
T  46168462 gatgaatttaccaaaatatcc 46168442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 202 - 311
Target Start/End: Original strand, 38113127 - 38113232
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    ||||| |||||||||||||||||    |||||||||||||||||||| ||||| ||| |||||||||||||||||||| |||| |||| |||||||||||    
T  38113127 atgtgacaatacacctcttacac----ccacacaaaatcctgacatgtggcaaagaaaagggagaggagatgaaagagtaagtatggttgtgagatgaat 38113222  T
Q  302 ttatcaaaat 311  Q
    ||| ||||||    
T  38113223 ttaccaaaat 38113232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 196 - 311
Target Start/End: Complemental strand, 41065325 - 41065216
Alignment:
Q  196 acccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgag 295  Q
    ||||| ||||||||||||||||||||||    ||| ||||||||||||||||| ||||||||| |||  ||||||| |||||||||||| |||| |||||    
T  41065325 acccccatgtggcaatacacctcttaca----tccgcacaaaatcctgacatgtggcaaggaaaagg--gaggagaggaaagagaaagtatggttgtgag 41065232  T
Q  296 atgaatttatcaaaat 311  Q
    ||||| ||| ||||||    
T  41065231 atgaaattaccaaaat 41065216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 750306 - 750349
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctg 318  Q
    |||| ||||||||||  |||||||||||||||||||||||||||    
T  750306 aagataaagtgtggttttgagatgaatttatcaaaatatccctg 750349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 174 - 315
Target Start/End: Complemental strand, 31513483 - 31513346
Alignment:
Q  174 aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatg 273  Q
    ||||||||| ||| ||||||  |||| |||||||||||||||||||||||    || |||||||||||||||||| ||||||||| ||||||||||||||    
T  31513483 aaaagagtggtgatacatgtacacccttatgtggcaatacacctcttaca----tctacacaaaatcctgacatgtggcaaggaaaagggagaggagatg 31513388  T
Q  274 aaagagaaagtgtggtcgtgagatgaatttatcaaaatatcc 315  Q
    ||||||||||| |||| |||||||||||||| ||||||||||    
T  31513387 aaagagaaagtatggttgtgagatgaatttaccaaaatatcc 31513346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 174 - 315
Target Start/End: Original strand, 31408537 - 31408674
Alignment:
Q  174 aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatg 273  Q
    ||||||||| ||| ||||||  ||||| ||||| |||||||||||||||||    ||||| |||||||||||||| ||||||||| ||||||||||||||    
T  31408537 aaaagagtggtgatacatgtacacccccatgtgacaatacacctcttacac----ccacataaaatcctgacatgtggcaaggaaaagggagaggagatg 31408632  T
Q  274 aaagagaaagtgtggtcgtgagatgaatttatcaaaatatcc 315  Q
    ||||||||||| |||| |||| ||||||||| ||||||||||    
T  31408633 aaagagaaagtatggttgtgaaatgaatttaccaaaatatcc 31408674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 177 - 326
Target Start/End: Complemental strand, 40237112 - 40236967
Alignment:
Q  177 agagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaa 276  Q
    |||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| || ||||||||||||||    
T  40237112 agagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagtgagaggagatgaaa 40237017  T
Q  277 gagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatgg 326  Q
    |||||| | |||| |||||||||| ||| |||||| |||||  |||||||    
T  40237016 gagaaaatatggttgtgagatgaaattaccaaaatgtccctaatgcatgg 40236967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 174 - 326
Target Start/End: Complemental strand, 33385067 - 33384919
Alignment:
Q  174 aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatg 273  Q
    ||||||||| ||| ||||||  ||||| ||||| ||||||||||||||||| |||    |||||||||||| ||| ||||||||| ||||||||||||||    
T  33385067 aaaagagtggtgatacatgtaaacccccatgtgacaatacacctcttacacccat----acaaaatcctgatatgtggcaaggaaaagggagaggagatg 33384972  T
Q  274 aaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatgg 326  Q
    ||||||||||| || | |||||||||||||| |||||| |||||  |||||||    
T  33384971 aaagagaaagtatgtttgtgagatgaatttaccaaaatgtccctaatgcatgg 33384919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 311
Target Start/End: Original strand, 27535137 - 27535268
Alignment:
Q  176 aagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaa 275  Q
    ||||||| ||| |||||| | || | ||||||||||||| ||||||||    |||||||||||| |||||||| ||||||||| | ||||||||||||||    
T  27535137 aagagtggtgatacatgtattcctccatgtggcaatacatctcttaca----tccacacaaaattctgacatgtggcaaggaaaaaggagaggagatgaa 27535232  T
Q  276 agagaaagtgtggtcgtgagatgaatttatcaaaat 311  Q
    ||||||||| | || |||||||||| ||| ||||||    
T  27535233 agagaaagtatagttgtgagatgaaattaccaaaat 27535268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 5810925 - 5810967
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccct 317  Q
    |||| |||||||||| |||||||||| ||||||||||||||||    
T  5810925 aagataaagtgtggttgtgagatgaacttatcaaaatatccct 5810967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 43317542 - 43317500
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccct 317  Q
    ||||| ||||||| | |||||||||||||||||||||||||||    
T  43317542 aagagtaagtgtgattgtgagatgaatttatcaaaatatccct 43317500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 43343625 - 43343667
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccct 317  Q
    |||| |||||||||| |||||||||| ||||||||||||||||    
T  43343625 aagataaagtgtggttgtgagatgaacttatcaaaatatccct 43343667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 44416935 - 44416977
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccct 317  Q
    |||| |||||||||| |||||||||| ||||||||||||||||    
T  44416935 aagataaagtgtggttgtgagatgaacttatcaaaatatccct 44416977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 5194232 - 5194272
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatcc 315  Q
    ||||| ||||||| | |||||||||||||||||||||||||    
T  5194232 aagagtaagtgtgattgtgagatgaatttatcaaaatatcc 5194272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 178 - 315
Target Start/End: Original strand, 55272284 - 55272417
Alignment:
Q  178 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaag 277  Q
    ||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  55272284 gagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaag 55272379  T
Q  278 agaaagtgtggtcgtgagatgaatttatcaaaatatcc 315  Q
    ||||||| |||| |||||||||||||| ||||||||||    
T  55272380 agaaagtatggttgtgagatgaatttaccaaaatatcc 55272417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 205 - 315
Target Start/End: Original strand, 17619087 - 17619193
Alignment:
Q  205 tggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaattta 304  Q
    ||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||    
T  17619087 tggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaattta 17619182  T
Q  305 tcaaaatatcc 315  Q
     ||||||||||    
T  17619183 ccaaaatatcc 17619193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 202 - 311
Target Start/End: Complemental strand, 38851681 - 38851576
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    ||||||||||||| ||||||||    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| |||||||||||    
T  38851681 atgtggcaatacatctcttaca----tccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatgaat 38851586  T
Q  302 ttatcaaaat 311  Q
    ||||||||||    
T  38851585 ttatcaaaat 38851576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 177 - 311
Target Start/End: Complemental strand, 19880147 - 19880017
Alignment:
Q  177 agagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaa 276  Q
    |||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||| |||||||||||    
T  19880147 agagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggaaaggagatgaaa 19880052  T
Q  277 gagaaagtgtggtcgtgagatgaatttatcaaaat 311  Q
    |||||||| || | |||||||||||||| ||||||    
T  19880051 gagaaagtatgattgtgagatgaatttaccaaaat 19880017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 202 - 315
Target Start/End: Complemental strand, 712128 - 712019
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| || | |||||||||||    
T  712128 atgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaaggaagaggagatgaaagagaaagtatgtttgtgagatgaat 712033  T
Q  302 ttatcaaaatatcc 315  Q
    ||| ||||||||||    
T  712032 ttaccaaaatatcc 712019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 202 - 315
Target Start/End: Complemental strand, 35037173 - 35037064
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| |||||||||||| |||||| ||| | |||| |||||||||||    
T  35037173 atgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagaagaaagaaaaaatatggttgtgagatgaat 35037078  T
Q  302 ttatcaaaatatcc 315  Q
    ||| ||||||||||    
T  35037077 ttaccaaaatatcc 35037064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 326
Target Start/End: Original strand, 48435487 - 48435631
Alignment:
Q  178 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaag 277  Q
    ||||| ||| ||||||  ||||| ||||| ||||||| |||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  48435487 gagtggtgatacatgtacacccccatgtgacaatacatctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaag 48435582  T
Q  278 agaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatgg 326  Q
    | ||||| || | |||||||||||||| ||| || |||||  |||||||    
T  48435583 ataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatgg 48435631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 196 - 317
Target Start/End: Original strand, 960796 - 960913
Alignment:
Q  196 acccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgag 295  Q
    ||||||||||| |||||||||||||||||    |||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||  | |  | ||    
T  960796 acccctatgtgacaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggataggagatgaaagagaaagtacgattataag 960891  T
Q  296 atgaatttatcaaaatatccct 317  Q
    ||||||||| |||||| |||||    
T  960892 atgaatttaccaaaatgtccct 960913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 304
Target Start/End: Complemental strand, 32728552 - 32728427
Alignment:
Q  175 aaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatga 274  Q
    |||||||| ||| ||||||  ||||| ||||||||||||||||||||||| ||    || |||||| | | ||| ||||||||| |||||||||||||||    
T  32728552 aaagagtggtgatacatgtacacccccatgtggcaatacacctcttacacgca----caaaaaatcttaatatgtggcaaggaaaagggagaggagatga 32728457  T
Q  275 aagagaaagtgtggtcgtgagatgaattta 304  Q
    |||||||||| || | ||||||||||||||    
T  32728456 aagagaaagtatgattgtgagatgaattta 32728427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 193 - 317
Target Start/End: Original strand, 36004040 - 36004159
Alignment:
Q  193 tgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgt 292  Q
    |||||||| ||||||||||||| ||||||||| ||     |||||||  ||| ||| ||||||||| ||||||||||||||||||||||||| |||| ||    
T  36004040 tgtacccc-atgtggcaatacatctcttacactcaa----acaaaattttgatatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgt 36004134  T
Q  293 gagatgaatttatcaaaatatccct 317  Q
    ||||| ||||||||||||| |||||    
T  36004135 gagataaatttatcaaaatgtccct 36004159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 310
Target Start/End: Original strand, 46827607 - 46827742
Alignment:
Q  171 taaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggag 270  Q
    |||||||||||| ||| ||||||  ||| | |||||| |||||| |||||||||    |||||||||||||||||||| |||||| || |||||| ||||    
T  46827607 taaaaaagagtggtgatacatgtacacctccatgtggaaatacatctcttacac----ccacacaaaatcctgacatgtggcaagaaaaagggaggggag 46827702  T
Q  271 atgaaagagaaagtgtggtcgtgagatgaatttatcaaaa 310  Q
    |||||||||||| | || | ||||||| |||||| |||||    
T  46827703 atgaaagagaaaatatgtttgtgagataaatttaccaaaa 46827742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 326
Target Start/End: Complemental strand, 28988572 - 28988521
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatgg 326  Q
    |||||||||||||||  |||||||||||||||||||| ||||| ||||||||    
T  28988572 aagagaaagtgtggttatgagatgaatttatcaaaatgtccctagtgcatgg 28988521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 172 - 326
Target Start/End: Original strand, 41281876 - 41282026
Alignment:
Q  172 aaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggaga 271  Q
    ||||||||||| ||| ||||||  ||||| || ||||||||||||||||||||    |||||||||||||||||||| ||||||||| || |||||||||    
T  41281876 aaaaaagagtggtgatacatgtacacccccatatggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagtgagaggaga 41281971  T
Q  272 tgaaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatgg 326  Q
    ||||||||||||| |||| |||||||||| |||||||||| |||||  |||||||    
T  41281972 tgaaagagaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgg 41282026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 168 - 311
Target Start/End: Complemental strand, 18491907 - 18491768
Alignment:
Q  168 atataaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagag 267  Q
    ||||||||||||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||||| ||||| ||||||||| ||||| ||    
T  18491907 atataaaaaagagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaatcctaacatgtggcaaggaaaagggatag 18491812  T
Q  268 gagatgaaagagaaagtgtggtcgtgagatgaatttatcaaaat 311  Q
    |||||||||||| |||| |||| |||||||||||||| ||||||    
T  18491811 gagatgaaagagtaagtatggttgtgagatgaatttaccaaaat 18491768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 174 - 310
Target Start/End: Original strand, 12531567 - 12531699
Alignment:
Q  174 aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatg 273  Q
    ||||||||| ||| ||||||  ||| | || ||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||    
T  12531567 aaaagagtgatgatacatgtacacctccatatggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatg 12531662  T
Q  274 aaagagaaagtgtggtcgtgagatgaatttatcaaaa 310  Q
    ||||||||||| |||| |||||||||||||| |||||    
T  12531663 aaagagaaagtatggttgtgagatgaatttaccaaaa 12531699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 174 - 326
Target Start/End: Original strand, 34895645 - 34895793
Alignment:
Q  174 aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatg 273  Q
    ||||||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||    
T  34895645 aaaagagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatg 34895740  T
Q  274 aaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatgg 326  Q
    ||||| ||||| || | |||||||||||||| ||| || |||||  |||||||    
T  34895741 aaagataaagtatgattgtgagatgaatttaccaatatgtccctaatgcatgg 34895793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 171 - 326
Target Start/End: Complemental strand, 43114756 - 43114605
Alignment:
Q  171 taaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggag 270  Q
    |||||| ||||| ||| ||||||  ||||  |||||||||||||||||||||||    |||||||||||||||||| | ||||||||| |||||||||||    
T  43114756 taaaaatgagtggtgatacatgtacaccctcatgtggcaatacacctcttacac----ccacacaaaatcctgacaagtggcaaggaaaagggagaggag 43114661  T
Q  271 atgaaagagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatgg 326  Q
    |||||||||||||| |||| |||||||||| ||| |||||| |||||  |||||||    
T  43114660 atgaaagagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatgg 43114605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 4451880 - 4451993
Alignment:
Q  200 ctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatga 299  Q
    ||||||||||||| || ||||||||    |||||||||||||||||||| || |||||| ||||||||||||||||||||||||| |||| |||||||||    
T  4451880 ctatgtggcaatatacttcttacac----ccacacaaaatcctgacatgtgggaaggaaaagggagaggagatgaaagagaaagtatggttgtgagatga 4451975  T
Q  300 atttatcaaaatatccct 317  Q
    ||||| ||||||||||||    
T  4451976 atttaccaaaatatccct 4451993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 202 - 326
Target Start/End: Original strand, 11825586 - 11825706
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || | ||||||||||     
T  11825586 atgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaagagaaagtatgattgtgagatgaaa 11825681  T
Q  302 ttatcaaaatatccctggtgcatgg 326  Q
    ||| |||||| |||||  |||||||    
T  11825682 ttaccaaaatgtccctaatgcatgg 11825706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 202 - 310
Target Start/End: Original strand, 966766 - 966870
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    |||||| ||||||||||||||||    |||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| || | |||||||||||    
T  966766 atgtggaaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggaggggagatgaaagagaaagtatgtttgtgagatgaat 966861  T
Q  302 ttatcaaaa 310  Q
    ||| |||||    
T  966862 ttaccaaaa 966870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 326
Target Start/End: Complemental strand, 16804160 - 16804016
Alignment:
Q  178 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaag 277  Q
    ||||| ||| ||||||  |||||||| || |||||||||||||||||    ||||||||||| |||||||| ||||||||| || | || ||||||||||    
T  16804160 gagtggtgatacatgtacacccctatatgacaatacacctcttacac----ccacacaaaattctgacatgtggcaaggaaaagtgtgaagagatgaaag 16804065  T
Q  278 agaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatgg 326  Q
    ||||||| |||| |||||||||| |||||||||| |||||  |||||||    
T  16804064 agaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgg 16804016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 326
Target Start/End: Complemental strand, 16843442 - 16843298
Alignment:
Q  178 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaag 277  Q
    ||||| ||| ||||||  |||||||| || |||||||||||||||||    ||||||||||| |||||||| ||||||||| || | || ||||||||||    
T  16843442 gagtggtgatacatgtacacccctatatgacaatacacctcttacac----ccacacaaaattctgacatgtggcaaggaaaagtgtgaagagatgaaag 16843347  T
Q  278 agaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatgg 326  Q
    ||||||| |||| |||||||||| |||||||||| |||||  |||||||    
T  16843346 agaaagtatggttgtgagatgaaattatcaaaatgtccctaatgcatgg 16843298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 202 - 311
Target Start/End: Original strand, 4299352 - 4299457
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    ||||||||||||| |||||||||    |||||||||||||||||||| ||||||||| ||||||||||||| |||||| |||| || | |||||||||||    
T  4299352 atgtggcaatacatctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagattaaagagtaagtatgattgtgagatgaat 4299447  T
Q  302 ttatcaaaat 311  Q
    ||| ||||||    
T  4299448 ttaccaaaat 4299457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 326
Target Start/End: Original strand, 12415392 - 12415512
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    ||||||||||||||||||||||    |||||||||||| ||||||||  |||| ||| ||||||||||||||||||||||||| |||| ||||||| ||     
T  12415392 atgtggcaatacacctcttaca----tccacacaaaattctgacatgtagcaaagaaaagggagaggagatgaaagagaaagtatggttgtgagataaaa 12415487  T
Q  302 ttatcaaaatatccctggtgcatgg 326  Q
    ||| |||||| |||||  |||||||    
T  12415488 ttaccaaaatgtccctaatgcatgg 12415512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 326
Target Start/End: Original strand, 12427452 - 12427572
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    ||||||||||||||||||||||    |||||||||||| ||||||||  |||| ||| ||||||||||||||||||||||||| |||| ||||||| ||     
T  12427452 atgtggcaatacacctcttaca----tccacacaaaattctgacatgtagcaaagaaaagggagaggagatgaaagagaaagtatggttgtgagataaaa 12427547  T
Q  302 ttatcaaaatatccctggtgcatgg 326  Q
    ||| |||||| |||||  |||||||    
T  12427548 ttaccaaaatgtccctaatgcatgg 12427572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 14285850 - 14285736
Alignment:
Q  196 acccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgag 295  Q
    ||||||||||| |||||||||||||||||    ||||| |||||||| ||||| || |||||| ||||||||||||||||||||||||| ||    ||||    
T  14285850 acccctatgtgacaatacacctcttacac----ccacataaaatcctcacatgtggtaaggaaaagggagaggagatgaaagagaaagtatgactctgag 14285755  T
Q  296 atgaatttatcaaaatatc 314  Q
    ||||||||| |||||||||    
T  14285754 atgaatttaccaaaatatc 14285736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 13780736 - 13780778
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccct 317  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  13780736 aagagaaagtgtggttgtgagatgaatttatcaaaatatccct 13780778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 262
Target Start/End: Original strand, 6518398 - 6518482
Alignment:
Q  174 aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagg 262  Q
    ||||||||| ||| ||||||  ||| | ||||| |||||||||| ||||||    |||||||||||||||||||| |||||||||||||    
T  6518398 aaaagagtggtgatacatgtacacctccatgtgtcaatacaccttttacac----ccacacaaaatcctgacatgtggcaaggaagagg 6518482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 42849864 - 42849901
Alignment:
Q  280 aaagtgtggtcgtgagatgaatttatcaaaatatccct 317  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  42849864 aaagtgtggttgtgagatgaacttatcaaaatatccct 42849901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 34817777 - 34817813
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaat 311  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  34817777 aagagaaagtgtggttgtgagatgaatttaccaaaat 34817813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 315
Target Start/End: Original strand, 45625 - 45760
Alignment:
Q  176 aagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaa 275  Q
    ||||||| ||| ||||||  || || |||||||||||||||||||||||    ||||| |||||||||||||| ||||||||| ||||||||||||||||    
T  45625 aagagtggtgatacatgtacacacccatgtggcaatacacctcttacac----ccacataaaatcctgacatgtggcaaggaaaagggagaggagatgaa 45720  T
Q  276 agagaaagtgtggtcgtgagatgaatttatcaaaatatcc 315  Q
    ||||||||| |||| |||||||||||||| ||||||||||    
T  45721 agagaaagtatggttgtgagatgaatttaccaaaatatcc 45760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 196 - 311
Target Start/End: Complemental strand, 17208248 - 17208137
Alignment:
Q  196 acccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgag 295  Q
    ||||||||||| ||||||||||||||||    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| |||||    
T  17208248 acccctatgtgacaatacacctcttaca----tccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgag 17208153  T
Q  296 atgaatttatcaaaat 311  Q
    ||||||||| ||||||    
T  17208152 atgaatttaccaaaat 17208137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 202 - 317
Target Start/End: Original strand, 32473326 - 32473437
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    |||||||||||||||||||||||    ||||||||||| |||||||| ||||| ||| ||||||||||||||||||||||||| |||| ||||||||||     
T  32473326 atgtggcaatacacctcttacac----ccacacaaaattctgacatgtggcaaagaaaagggagaggagatgaaagagaaagtatggttgtgagatgaaa 32473421  T
Q  302 ttatcaaaatatccct 317  Q
    ||| ||||||||||||    
T  32473422 ttaccaaaatatccct 32473437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 178 - 315
Target Start/End: Original strand, 30622627 - 30622760
Alignment:
Q  178 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaag 277  Q
    ||||| ||| ||||||  ||||| |||||||||||||||||||||||    |||||||||||  ||||||| ||||||||| || |||||||||||||||    
T  30622627 gagtggtgatacatgtacacccccatgtggcaatacacctcttacac----ccacacaaaattttgacatgtggcaaggaaaagagagaggagatgaaag 30622722  T
Q  278 agaaagtgtggtcgtgagatgaatttatcaaaatatcc 315  Q
    ||||||| |||| ||||||| |||||| ||||||||||    
T  30622723 agaaagtatggttgtgagataaatttaccaaaatatcc 30622760  T

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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 178 - 311
Target Start/End: Original strand, 10678060 - 10678189
Alignment:
Q  178 gagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaag 277  Q
    ||||| ||| ||||||  ||||| ||||||||||||| |||||||||    |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  10678060 gagtggtgatacatgtacacccccatgtggcaatacatctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaag 10678155  T
Q  278 agaaagtgtggtcgtgagatgaatttatcaaaat 311  Q
    ||||||| |||| |||||||||||||| ||||||    
T  10678156 agaaagtatggttgtgagatgaatttaccaaaat 10678189  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 202 - 326
Target Start/End: Complemental strand, 35181684 - 35181564
Alignment:
Q  202 atgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaat 301  Q
    |||||||||||||||||||||||    |||||||||||||||||||| ||||||||| || |||||||||||||||||||||| |||| ||||||||||     
T  35181684 atgtggcaatacacctcttacac----ccacacaaaatcctgacatgtggcaaggaaaagtgagaggagatgaaagagaaagtatggttgtgagatgaaa 35181589  T
Q  302 ttatcaaaatatccctggtgcatgg 326  Q
    ||| |||||| |||||  |||||||    
T  35181588 ttaccaaaatgtccctaatgcatgg 35181564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 176 - 326
Target Start/End: Complemental strand, 34304981 - 34304836
Alignment:
Q  176 aagagtgttgacacatgtgtacccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaa 275  Q
    ||||||| ||| ||||||  ||||| |||||||||||||||||||||||    ||| |||||||||||||||| ||||||||| || |||||||||||||    
T  34304981 aagagtggtgatacatgtacacccc-atgtggcaatacacctcttacac----ccaaacaaaatcctgacatgtggcaaggaaaagtgagaggagatgaa 34304887  T
Q  276 agagaaagtgtggtcgtgagatgaatttatcaaaatatccctggtgcatgg 326  Q
    ||||||||| |||| |||||||||| ||| |||||| |||||  |||||||    
T  34304886 agagaaagtatggttgtgagatgaaattaccaaaatgtccctaatgcatgg 34304836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 19386520 - 19386601
Alignment:
Q  229 ccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaatttatcaaaa 310  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| | || ||||||||||||||||||||    
T  19386520 ccacacaaaatcctgacatgtggcaaggaaaagggagaggagatgaaagagaaagtatagttgtgagatgaatttatcaaaa 19386601  T

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Target: chr8; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 196 - 313
Target Start/End: Original strand, 16358759 - 16358872
Alignment:
Q  196 acccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgag 295  Q
    ||||| || ||||||||||||||||| ||    ||||| |||||| ||||||| |||||| || ||||||||||||||||| ||||||| |||| |||||    
T  16358759 acccccatatggcaatacacctcttatac----ccacataaaatcatgacatgtggcaagaaaaagggagaggagatgaaaaagaaagtatggttgtgag 16358854  T
Q  296 atgaatttatcaaaatat 313  Q
    ||||||||||||||||||    
T  16358855 atgaatttatcaaaatat 16358872  T

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Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 205 - 317
Target Start/End: Original strand, 18066653 - 18066761
Alignment:
Q  205 tggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaattta 304  Q
    ||||||||||||||||||||    ||||| ||||| |||||||| ||||||||| | ||||||||||||||||||||||| |||| |||||||||| |||    
T  18066653 tggcaatacacctcttacac----ccacataaaattctgacatgtggcaaggaaaatggagaggagatgaaagagaaagtatggttgtgagatgaaatta 18066748  T
Q  305 tcaaaatatccct 317  Q
      |||||||||||    
T  18066749 ctaaaatatccct 18066761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 16603587 - 16603663
Alignment:
Q  235 aaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgagatgaatttatcaaaat 311  Q
    |||||||||||||| ||||||||| |||||||||||||||||||| |||| |||| |||||||||||||| ||||||    
T  16603587 aaaatcctgacatgtggcaaggaaaagggagaggagatgaaagagtaagtatggttgtgagatgaatttaccaaaat 16603663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 317
Target Start/End: Original strand, 33629919 - 33630036
Alignment:
Q  196 acccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgag 295  Q
    ||||| |||||||||||||||||||||||    | |||||||||  ||||||| ||||| ||| ||||||||||||||||||||||||| | || |||||    
T  33629919 acccccatgtggcaatacacctcttacac----ctacacaaaattttgacatgtggcaaagaaaagggagaggagatgaaagagaaagtatagttgtgag 33630014  T
Q  296 atgaatttatcaaaatatccct 317  Q
    ||||| |||  ||||| |||||    
T  33630015 atgaaattactaaaatgtccct 33630036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 29705461 - 29705419
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccct 317  Q
    |||| |||||||||| |||||||||| ||||||||||||||||    
T  29705461 aagataaagtgtggttgtgagatgaacttatcaaaatatccct 29705419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 40528635 - 40528677
Alignment:
Q  275 aagagaaagtgtggtcgtgagatgaatttatcaaaatatccct 317  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||    
T  40528635 aagagaaagtgtggttgtgagataaatttatcaaaatgtccct 40528677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 196 - 326
Target Start/End: Original strand, 35382 - 35508
Alignment:
Q  196 acccctatgtggcaatacacctcttacacacatccacacaaaatcctgacatggggcaaggaagagggagaggagatgaaagagaaagtgtggtcgtgag 295  Q
    ||||| ||||||||||||||||||||||| |||    ||||||||| |||||| ||||||||| ||||||||||||||||||||||||| |||| |||||    
T  35382 acccccatgtggcaatacacctcttacacccat----acaaaatccagacatgcggcaaggaaaagggagaggagatgaaagagaaagtatggttgtgag 35477  T
Q  296 atgaatttatcaaaatatccctggtgcatgg 326  Q
    ||||||||| ||| || |||||  |||||||    
T  35478 atgaatttaccaatatgtccctaatgcatgg 35508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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