View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_high_22 (Length: 337)
Name: NF1490_high_22
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 39100766 - 39100963
Alignment:
| Q |
25 |
ctgcttagttttggttaattagaactgacttgatggcataactagtttagttttgttgaattgaaactttagtgtaccatgcagattttgtccagaaact |
124 |
Q |
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| T |
39100766 |
ctgcttagttttggttaattagaactgacataatggcataactagtt-agttttgttgaattgaaattttagcgtaccttgcagattttgtcgagaaact |
39100864 |
T |
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| Q |
125 |
tatcacaaagaaacaaaatattgaagctgctaga-tcatctgtgcttatatgatgcaaacaaggaccaaactggcaaaactcttgcatccaagaaaactg |
223 |
Q |
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| T |
39100865 |
tatcatgaagaaacaaaatatcgaagctgctagattcatccgtgcttatataatgccaacaagaaccaaaccggc-aatctcttgcatccaagaaaactg |
39100963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 39605036 - 39605197
Alignment:
| Q |
25 |
ctgcttagttttggttaattagaactgacttgatggcataactagtttagttttgttgaattgaaactttagtgtaccatgcagattttgtccagaaact |
124 |
Q |
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| T |
39605036 |
ctgcttagttttggttaattgggactgacttgatggcataactagtt-agttttgttgaagtgaaattttggtgcaccttgcagattttgttcagaaact |
39605134 |
T |
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| Q |
125 |
tatcacaaagaaacaaaatattgaagctgctaga-tcatctgtgcttatatgatgcaaacaag |
186 |
Q |
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| T |
39605135 |
tatcatgaagaaacaaaatattgaagctgctagattcattcgtgcttatataatgccaacaag |
39605197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 39503249 - 39503116
Alignment:
| Q |
28 |
cttagttttggttaattagaactgacttgatggcataactagt--ttagttttgttgaattgaaactttagtgtaccatgcagattttgtccagaaactt |
125 |
Q |
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| T |
39503249 |
cttagttttagttaatttgaaccgacttgatggcataataactcattaggtttgatgaagtgaaattttgttgtaccttgcagattttgttcagaaactt |
39503150 |
T |
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| Q |
126 |
atcacaaagaaacaaaatattgaagctgctagat |
159 |
Q |
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| T |
39503149 |
atcatgcaggaacaaaagactgaagctgctagat |
39503116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 315
Target Start/End: Complemental strand, 39503016 - 39502924
Alignment:
| Q |
224 |
gctaattctattttatgaatt-attccatcttcacgcacctgtttgttagttataaatcaacatgttgattgtgaaagcaggaccatcctcca |
315 |
Q |
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| T |
39503016 |
gctaattctattttataaatttattccatgttcatgcacctgcatgttggttataaattaatgtgttaaatgtgaaatcaggaccatcctcca |
39502924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 314
Target Start/End: Original strand, 39605272 - 39605357
Alignment:
| Q |
229 |
ttctattttatgaattattccatcttcacgcacctgtttgttagttataaatcaacatgttgattgtgaaagcaggaccatcctcc |
314 |
Q |
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| T |
39605272 |
ttctattttatgaaatatcccatcttcatgcacctgcatgttggttgtaaattaatacgtggactgtgaaatcaggaccatcctcc |
39605357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 173
Target Start/End: Original strand, 33153104 - 33153198
Alignment:
| Q |
80 |
ttgaattgaaactttagtgtaccatgcagattttgtccagaaacttatcacaaagaaacaaaatattgaagctgctaga-tcatctgtgcttata |
173 |
Q |
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| T |
33153104 |
ttgaagtgaaactttattgcaacttgcagattttgttcagaatcttatccggaagaagcaacatattgaagctgttagattcatatgtgcttata |
33153198 |
T |
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