View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_high_28 (Length: 304)
Name: NF1490_high_28
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_high_28 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 4592252 - 4591950
Alignment:
| Q |
1 |
attaatctcattctacatattctttgacaggatatgtctcattgtactgaaacagctttcaaaactcttgagaacaagcgtaagccactagtttttaagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4592252 |
attaatctcattctacatattctttgacaggatatgtctcattgtactgaaacagctttcaaaactcttgagaacaagcgcaagccactagtttttaagg |
4592153 |
T |
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| Q |
101 |
atttaaggaaaatttgggacaagtatgatccgaatcttccttgggagaggggatattacaatgagtcgaacacattattgctggatgattctccttacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4592152 |
atttaaggaaaatttgggacaagtatgatccgaatcttccttgggagaggggatattacaatgagtcgaacacattattgctggatgattctccttacaa |
4592053 |
T |
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| Q |
201 |
ggcgctgcttaatccagtaaataaacgaacactttctttacatannnnnnnnncatttatcaagcttattttcagccatcacatattgtgacatggccta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4592052 |
ggcgctgcttaatccagtaaataaacgaacactttctttacata-ttttttttcatttatcaagcttattttcagccatcacatattgtgacatggccca |
4591954 |
T |
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| Q |
301 |
acct |
304 |
Q |
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|||| |
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| T |
4591953 |
acct |
4591950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 4584508 - 4584274
Alignment:
| Q |
1 |
attaatctcattctacatattctttgacaggatatgtctcattgtactgaaacagctttcaaaactcttgagaacaagcgtaagccactagtttttaagg |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4584508 |
attaatctcattctacatattctttgacaggatttgtcacattgtactgaaacagctttcaaaactcttgagaacaagcgcaagccactagtttttaagg |
4584409 |
T |
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| Q |
101 |
atttaaggaaaatttgggacaagtatgatccgaatcttccttgggagaggggatattacaatgagtcgaacacattattgctggatgattctccttacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||| || |||||||||||||||| ||||| |
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| T |
4584408 |
atttaaggaaaatttgggacaagtatgatccgaatcttccttgggagaagaaatattacaatgactcgaacacgttgctgctggatgattctccctacaa |
4584309 |
T |
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| Q |
201 |
ggcgctgcttaatccagtaaataaacgaacacttt |
235 |
Q |
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||| | |||||||| |||||||||| ||| |||| |
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| T |
4584308 |
ggcattccttaatcctgtaaataaactaacccttt |
4584274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 4600682 - 4600448
Alignment:
| Q |
5 |
atctcattctacatattctttgacaggatatgtctcattgtactgaaacagctttcaaaactcttgagaacaagcgtaagccactagtttttaaggattt |
104 |
Q |
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|||||||||||||||||||||||||| | |||| ||||||||||||||| |||||||||||||| | ||||||| ||||||||||||||||||||||| |
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| T |
4600682 |
atctcattctacatattctttgacagaacctgtcacattgtactgaaacaactttcaaaactcttcaaaacaagcacaagccactagtttttaaggattt |
4600583 |
T |
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| Q |
105 |
aaggaaaatttgggacaagtatgatccgaatcttccttgggagaggggatattacaatgagtcgaacacattattgctggatgattctccttacaaggcg |
204 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| || ||||||||||||| |||||||| |
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| T |
4600582 |
aaggaaaatttggaacaagtatgatcctaatcttccttgggagaagggatattacaatgagtcaaacacattgctgttggatgattctccctacaaggca |
4600483 |
T |
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| Q |
205 |
ctgcttaatccagtaaataaacgaacactttcttt |
239 |
Q |
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||||||||||| |||||| ||| ||| ||| |||| |
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| T |
4600482 |
ctgcttaatcctgtaaatcaactaacccttccttt |
4600448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 4573281 - 4573043
Alignment:
| Q |
1 |
attaatctcattctacatattctttgacaggatatgtctcattgtactgaaacagctttcaaaactcttgagaacaagcgtaagccactagtttttaagg |
100 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| ||||| |
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| T |
4573281 |
attaatctcatcctacatattctttgacaggatatatcacattgtactgaaacagctttccaaactgttgagaacaagcgcaagccactagtttgtaagg |
4573182 |
T |
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| Q |
101 |
atttaaggaaaatttgggacaagtatgatccgaatcttccttgggagaggggatattacaatgagtcgaacacattattgctggatgattctccttacaa |
200 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| || |||||||| | ||||||||||||| |||| |
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| T |
4573181 |
atctaaggaaaatttgggacaagtatgatccaaatcttccttgggaaaagggatattacaatgaatcaaacacattgcttttggatgattctccccacaa |
4573082 |
T |
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| Q |
201 |
ggcgctgcttaatccagtaaataaacgaacactttcttt |
239 |
Q |
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||| |||||||||| |||||||||| ||| ||| |||| |
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| T |
4573081 |
ggcattgcttaatcctgtaaataaactaacccttccttt |
4573043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 4605661 - 4605499
Alignment:
| Q |
64 |
actcttgagaacaagcgtaagccactagtttttaaggatttaaggaaaatttgggacaagtatgatccgaatcttccttgggagaggggatattacaatg |
163 |
Q |
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|||||||| ||||||| ||| || | || ||||||||| | || ||||||||||| ||||| |||||||||||||||||||||| ||| || ||||||| |
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| T |
4605661 |
actcttgaagacaagcgcaagacagtggtgtttaaggatctgagaaaaatttgggataagtacgatccgaatcttccttgggagaaggggtactacaatg |
4605562 |
T |
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| Q |
164 |
agtcgaacacattattgctggatgattctccttacaaggcgctgcttaatccagtaaataaac |
226 |
Q |
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| || || ||||| | ||||||| ||||| ||||||| | | |||||||| |||||||||| |
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| T |
4605561 |
aatcaaatacattgcttttggatgactctccctacaaggggttacttaatcctgtaaataaac |
4605499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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