View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_high_3 (Length: 607)
Name: NF1490_high_3
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 11 - 593
Target Start/End: Original strand, 2352547 - 2353123
Alignment:
| Q |
11 |
caaaggcaagaaatcattggacggacatatgctacgtgtacggctaagatttaatgttcaggggacctcaaaataatagaaaatcctccgtatttttggc |
110 |
Q |
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| T |
2352547 |
caaaggcaagaaatcattggac----atatgctacgtgtacggctaagatttaatgttcaggggacctcaaaataatagaaaatcctccgtatttttggc |
2352642 |
T |
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| Q |
111 |
tttctccggttttgtgtacgggttagggtgtgtcatgtgtaacgagttgatcattaccttgtgacatgtttcttattgaaagagcaaattaattaaggca |
210 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2352643 |
tttttccggttttgtgtacgggttagggtgtgtcatgtgtaacgagttgatcattaccttgtgacatgtttcttattgaaagagcaaattaattaaggca |
2352742 |
T |
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| Q |
211 |
tcaattttaatagatacagtgtaggggaccaaatctggttgagaatgtgaatactgtnnnnnnnnnnnnnccaacactgcttaagtagtaagcaccaagt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2352743 |
tcaattttaatagatacagtgtaggggaccaaatctggttgagaatgtgaatactgtaaaaaaaaaaa--ccaacactgcttaagtagtaagcaccaagt |
2352840 |
T |
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| Q |
311 |
gggtttgattatacgttagagtttaaaaaatcttagttgtattgtagataagacaattatgcaggccagggttttttctcagaatatatcaaacatccca |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2352841 |
gggtttgattatacgttagagtttaaaaaatcttagttgtattgtagataagacaattatgcaggccagggttttttctcagaatatatcaaacatccca |
2352940 |
T |
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| Q |
411 |
tcctcgatctacaagaaagtgacattacatatcaaatgtggcactgatgtagacatgccacaataggatcattaactatcataactttgcacatgatgac |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2352941 |
tcctcgatctacaagaaagtgacattacatatcaaatgtggcaccgatgtagacatgccacaataggatcattaactatcataactttgcacatgatgac |
2353040 |
T |
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| Q |
511 |
tttaatctgtggtgtaaaacatatgttttgcaatgagagattgcatagatttgtctcaatgaacaaagaaaaagacgtatgtg |
593 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2353041 |
tttaatctgtggtgtaaaacatatgttttgcaatgagagattgcatagatttgtctcaatgaacaaagaaaaagacgtatgtg |
2353123 |
T |
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