View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1490_high_32 (Length: 285)

Name: NF1490_high_32
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1490_high_32
NF1490_high_32
[»] chr8 (5 HSPs)
chr8 (2-160)||(40284118-40284276)
chr8 (2-160)||(26245141-26245299)
chr8 (41-163)||(44503929-44504051)
chr8 (44-151)||(23550409-23550516)
chr8 (46-160)||(30528943-30529057)
[»] chr4 (10 HSPs)
chr4 (2-160)||(19273426-19273584)
chr4 (2-165)||(35809904-35810067)
chr4 (14-160)||(13093571-13093717)
chr4 (1-143)||(27864420-27864562)
chr4 (64-158)||(16171192-16171285)
chr4 (41-160)||(33524040-33524159)
chr4 (36-162)||(53346985-53347111)
chr4 (108-160)||(16021472-16021524)
chr4 (41-162)||(48403198-48403319)
chr4 (36-128)||(17329240-17329332)
[»] chr5 (5 HSPs)
chr5 (2-165)||(39239058-39239221)
chr5 (1-160)||(13478991-13479150)
chr5 (41-161)||(32362750-32362870)
chr5 (46-159)||(4938750-4938863)
chr5 (41-149)||(4218725-4218833)
[»] chr6 (2 HSPs)
chr6 (2-160)||(26653556-26653714)
chr6 (2-160)||(26759524-26759682)
[»] chr3 (9 HSPs)
chr3 (2-162)||(51305073-51305233)
chr3 (160-269)||(22907752-22907861)
chr3 (2-158)||(36177884-36178040)
chr3 (41-160)||(31169566-31169685)
chr3 (41-160)||(48886121-48886240)
chr3 (41-160)||(49406623-49406742)
chr3 (108-160)||(37182466-37182518)
chr3 (42-162)||(12975490-12975610)
chr3 (45-82)||(51999439-51999476)
[»] chr7 (7 HSPs)
chr7 (2-160)||(45548792-45548950)
chr7 (41-162)||(20354845-20354966)
chr7 (41-162)||(38352270-38352391)
chr7 (108-160)||(30720747-30720799)
chr7 (41-150)||(39770272-39770381)
chr7 (50-158)||(38970715-38970823)
chr7 (70-160)||(12117039-12117129)
[»] scaffold0016 (1 HSPs)
scaffold0016 (65-162)||(65711-65808)
[»] chr2 (4 HSPs)
chr2 (41-160)||(7762481-7762600)
chr2 (41-150)||(17486458-17486567)
chr2 (46-162)||(5144661-5144777)
chr2 (46-157)||(13150908-13151019)
[»] chr1 (1 HSPs)
chr1 (64-164)||(45364161-45364261)
[»] scaffold1905 (2 HSPs)
scaffold1905 (44-150)||(735-841)
scaffold1905 (45-82)||(588-625)
[»] scaffold0004 (1 HSPs)
scaffold0004 (41-112)||(106495-106566)


Alignment Details
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 2 - 160
Target Start/End: Original strand, 40284118 - 40284276
Alignment:
Q  2 caagcagacaagcgtaacaatccacgtgtcatggcggtgcagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagc 101  Q
    ||||||| ||| |||||||| ||||||||||  ||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40284118 caagcagccaatcgtaacaagccacgtgtcactgcgggccagactttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcaatagc 40284217  T
Q  102 ctcctccaatgatctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 160  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40284218 ctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 40284276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 2 - 160
Target Start/End: Original strand, 26245141 - 26245299
Alignment:
Q  2 caagcagacaagcgtaacaatccacgtgtcatggcggtgcagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagc 101  Q
    ||||||| ||| |||||||| ||||||||||  ||||  ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26245141 caagcagccaatcgtaacaagccacgtgtcactgcgggccaggctttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcaatagc 26245240  T
Q  102 ctcctccaatgatctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 160  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26245241 ctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 26245299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 44503929 - 44504051
Alignment:
Q  41 cagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaa 140  Q
    ||||||||||| ||||| || | ||||| |||||||||||||||  ||||| ||||||| ||  |||||||||| ||||| || |||| |||||||||||    
T  44503929 cagactttcaatatgtttaaacctttcatcacctctctcctcttctctcattttcaataaccctctccaatgatttcaacctgatgaaaatggcattcaa 44504028  T
Q  141 caagccattgtaaatggtctaag 163  Q
     ||||||||||| ||||||||||    
T  44504029 taagccattgtagatggtctaag 44504051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 23550409 - 23550516
Alignment:
Q  44 actttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaacaa 143  Q
    |||||||||||  | || | ||||| |||||||||||||||||||||| ||||||| ||| ||||||| || ||||||| ||||| || || ||||| ||    
T  23550409 actttcaacatacttaatcctttcatcacctctctcctctttcctcattttcaatacccttctccaatcatttcaacatattgaaaattgctttcaataa 23550508  T
Q  144 gccattgt 151  Q
    ||||||||    
T  23550509 gccattgt 23550516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 30529057 - 30528943
Alignment:
Q  46 tttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaacaagc 145  Q
    |||||||||||| |||| ||||| ||||||| |||||||  ||||| ||||||| ||  |||||||| | |||| || ||||| ||  ||||||| | ||    
T  30529057 tttcaacatgtttaaccctttcatcacctctttcctcttctctcattttcaatacccctctccaatggtttcaatatattgaaaataacattcaatatgc 30528958  T
Q  146 cattgtaaatggtct 160  Q
    |||||||||||||||    
T  30528957 cattgtaaatggtct 30528943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 2 - 160
Target Start/End: Original strand, 19273426 - 19273584
Alignment:
Q  2 caagcagacaagcgtaacaatccacgtgtcatggcggtgcagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagc 101  Q
    ||||||| ||| |||||||| ||||||||||  ||||  ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19273426 caagcagccaatcgtaacaaaccacgtgtcactgcgggccaggctttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcaatagc 19273525  T
Q  102 ctcctccaatgatctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 160  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19273526 ctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 19273584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 35809904 - 35810067
Alignment:
Q  2 caagcagacaagcgtaacaatccacgtgtcatggcggtgcagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagc 101  Q
    ||||||| ||| |||||||| ||||||||||  || |  ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  35809904 caagcagccaatcgtaacaagccacgtgtcactgcaggccaggctttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcagtagc 35810003  T
Q  102 ctcctccaatgatctcaacatgttgaatatggcattcaacaagccattgtaaatggtctaagag 165  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35810004 ctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtcttagag 35810067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 13093717 - 13093571
Alignment:
Q  14 cgtaacaatccacgtgtcatggcggtgcagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatga 113  Q
    |||||||| ||||||||||  ||||  || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||     
T  13093717 cgtaacaagccacgtgtcactgcgggccatactttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcattagcctcctccaatgg 13093618  T
Q  114 tctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13093617 tctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 13093571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 27864420 - 27864562
Alignment:
Q  1 tcaagcagacaagcgtaacaatccacgtgtcatggcggtgcagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatag 100  Q
    |||||||| ||| ||||||||  || ||||||  ||||  ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27864420 tcaagcagccaatcgtaacaagtcatgtgtcactgcgggccaggctttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcaatag 27864519  T
Q  101 cctcctccaatgatctcaacatgttgaatatggcattcaacaa 143  Q
    |||||||||| | ||||||||||||||||||||||||||||||    
T  27864520 cctcctccaacggtctcaacatgttgaatatggcattcaacaa 27864562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 64 - 158
Target Start/End: Complemental strand, 16171285 - 16171192
Alignment:
Q  64 tttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaacaagccattgtaaatggt 158  Q
    ||||| ||||||||||||||| ||| |||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  16171285 tttcatcacctctctcctcttcccttatattcaatagccttctccaatgg-ctcaacatgttgaatatggcattcaacaagccattgtaaatggt 16171192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 33524040 - 33524159
Alignment:
Q  41 cagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaa 140  Q
    ||||||||||||||||| || | ||||| |||||||||||||||  ||||| ||||||| ||  ||| |||||| |||| | |||||| |||||||||||    
T  33524040 cagactttcaacatgtttaaacctttcatcacctctctcctcttctctcattttcaataaccctctcaaatgatttcaataggttgaaaatggcattcaa 33524139  T
Q  141 caagccattgtaaatggtct 160  Q
     ||||||||||| |||||||    
T  33524140 taagccattgtagatggtct 33524159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 36 - 162
Target Start/End: Complemental strand, 53347111 - 53346985
Alignment:
Q  36 cggtgcagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggca 135  Q
    |||| |||| |||||||||||| |||| ||||| ||||||| |||| ||  ||||| ||||||| ||  |||||||| | |||| || ||||| ||||||    
T  53347111 cggttcagaatttcaacatgtttaaccctttcatcacctctttccttttctctcattttcaatacccctctccaatggtttcaatatattgaaaatggca 53347012  T
Q  136 ttcaacaagccattgtaaatggtctaa 162  Q
    ||||| | |||||||||||||||||||    
T  53347011 ttcaataggccattgtaaatggtctaa 53346985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 16021472 - 16021524
Alignment:
Q  108 caatgatctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 160  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  16021472 caatggtctcaacatgttgaatatggcattcaacaagccattgtaagtggtct 16021524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 48403319 - 48403198
Alignment:
Q  41 cagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaa 140  Q
    ||||||||||||||  | || | ||||| ||||||||| ||||| |||||| ||||||| ||| ||||||| || ||||||| ||||| || || |||||    
T  48403319 cagactttcaacatacttaatcctttcatcacctctcttctcttccctcattttcaatacccttctccaatcatttcaacatattgaaaattgctttcaa 48403220  T
Q  141 caagccattgtaaatggtctaa 162  Q
    |||||||||  | |||||||||    
T  48403219 caagccattagagatggtctaa 48403198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 17329332 - 17329240
Alignment:
Q  36 cggtgcagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaa 128  Q
    |||| |||| |||||||||||| |||  ||||| ||||||| |||||||  ||||| ||||||||    |||||||| | |||||||||||||    
T  17329332 cggtacagattttcaacatgtttaacactttcatcacctctttcctcttctctcattttcaatagggcactccaatggtttcaacatgttgaa 17329240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 5e-59; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 39239058 - 39239221
Alignment:
Q  2 caagcagacaagcgtaacaatccacgtgtcatggcggtgcagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagc 101  Q
    ||||||| ||| | |||||| ||||||||||  ||||  ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39239058 caagcagccaatcataacaagccacgtgtcactgcgggccaggctttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcaatagc 39239157  T
Q  102 ctcctccaatgatctcaacatgttgaatatggcattcaacaagccattgtaaatggtctaagag 165  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39239158 ctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtctgagag 39239221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 13479150 - 13478991
Alignment:
Q  1 tcaagcagacaagcgtaacaatccacgtgtcatggcggtgcagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatag 100  Q
    |||||||| ||| |||||||| ||||||||||  ||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  13479150 tcaagcagccaatcgtaacaagccacgtgtcactgcgggccagactttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcaacag 13479051  T
Q  101 cctcctccaatgatctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 160  Q
    ||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  13479050 cctcctcaaatggtctcaacatgttgaatatgacattcaacaagccattgtaaatggtct 13478991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 41 - 161
Target Start/End: Complemental strand, 32362870 - 32362750
Alignment:
Q  41 cagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaa 140  Q
    ||||||||||||||||| || | ||||| |||||||||||||||  ||||| ||||||| ||  |||||||||| |||||| |||||| ||| |||||||    
T  32362870 cagactttcaacatgtttaaacctttcaccacctctctcctcttctctcattttcaataaccctctccaatgatttcaacaggttgaaaatgacattcaa 32362771  T
Q  141 caagccattgtaaatggtcta 161  Q
     ||||||||||| ||||||||    
T  32362770 taagccattgtagatggtcta 32362750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 4938750 - 4938863
Alignment:
Q  46 tttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaacaagc 145  Q
    |||||||||||| |||| ||||| ||||||| |||||||  ||||| ||||||| ||  || ||||| | |||| ||||| || ||| ||||||| | ||    
T  4938750 tttcaacatgtttaaccctttcatcacctctttcctcttctctcattttcaataccccactacaatggtttcaatatgttcaaaatgacattcaataggc 4938849  T
Q  146 cattgtaaatggtc 159  Q
    ||||||||||||||    
T  4938850 cattgtaaatggtc 4938863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 149
Target Start/End: Complemental strand, 4218833 - 4218725
Alignment:
Q  41 cagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaa 140  Q
    ||||||||||||||  | || | ||||| ||||||||| ||||| |||||| |||||||  || ||||||| || ||||||| || || ||  | |||||    
T  4218833 cagactttcaacatacttaatcatttcatcacctctcttctcttccctcattttcaatacgcttctccaatcatttcaacatattaaaaattactttcaa 4218734  T
Q  141 caagccatt 149  Q
    |||||||||    
T  4218733 caagccatt 4218725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 26653714 - 26653556
Alignment:
Q  2 caagcagacaagcgtaacaatccacgtgtcatggcggtgcagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagc 101  Q
    ||||||| ||| |||||||| ||||||||||  ||||  ||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  26653714 caagcagccaatcgtaacaagccacgtgtcactgcgggccaggctttcaacatgttgaaccttttcaacacctctctccccttccctcatattcaatagc 26653615  T
Q  102 ctcctccaatgatctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 160  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26653614 ctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 26653556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 26759682 - 26759524
Alignment:
Q  2 caagcagacaagcgtaacaatccacgtgtcatggcggtgcagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagc 101  Q
    ||||||| ||| |||||||| ||||||||||  ||||  ||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  26759682 caagcagccaatcgtaacaagccacgtgtcactgcgggccaggctttcaacatgttgaaccttttcaacacctctctccccttccctcatattcaatagc 26759583  T
Q  102 ctcctccaatgatctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 160  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26759582 ctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 26759524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 2 - 162
Target Start/End: Original strand, 51305073 - 51305233
Alignment:
Q  2 caagcagacaagcgtaacaatccacgtgtcatggcggtgcagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagc 101  Q
    ||||||| ||| ||||||||  |||||||||  || |  ||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  51305073 caagcagccaatcgtaacaagtcacgtgtcactgcagaccaggctttcaacatgttgaaccttttcaacacctctctcatcttccctcatattcaatagc 51305172  T
Q  102 ctcctccaatgatctcaacatgttgaatatggcattcaacaagccattgtaaatggtctaa 162  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51305173 ctcctccaatggtctcaacatgttgaatatggcattcaacaagccattgtaaatggtctaa 51305233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 160 - 269
Target Start/End: Complemental strand, 22907861 - 22907752
Alignment:
Q  160 taagagaaccatcaatattatgttttcagatcaaacaacctatttggtcctctatcagaatgataacattatcaatttgatgaaaaattacagggaaact 259  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22907861 taagagaaccatcaatattatgtttccagatcaaacaacttatttggtcttctatcagaatgataacattatcaatttgatgagaaattacagggaaact 22907762  T
Q  260 atgttgcata 269  Q
    ||||||||||    
T  22907761 atgttgcata 22907752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 36178040 - 36177884
Alignment:
Q  2 caagcagacaagcgtaacaatccacgtgtcatggcggtgcagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagc 101  Q
    ||||||| ||| |||||||| |||| |||||  | ||  ||| ||||||||||||||||||| ||||||||||||  |||||| ||||||||||||||||    
T  36178040 caagcagccaatcgtaacaagccacatgtcactgtgggtcaggctttcaacatgttgaacctcttcaacacctctgccctcttccctcatattcaatagc 36177941  T
Q  102 ctcctccaatgatctcaacatgttgaatatggcattcaacaagccattgtaaatggt 158  Q
    || |||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  36177940 cttctccaatagtctcaacatgttgaatatggcattcaacaagccattgtaaatggt 36177884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 31169685 - 31169566
Alignment:
Q  41 cagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaa 140  Q
    ||||||||||||||||| || |  |||| |||||||||||||||  ||||| ||||||| ||  |||||||||| ||||| | ||||| |||||||||||    
T  31169685 cagactttcaacatgtttaaacccttcatcacctctctcctcttctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaa 31169586  T
Q  141 caagccattgtaaatggtct 160  Q
    |||||||||||| |||||||    
T  31169585 caagccattgtagatggtct 31169566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 48886240 - 48886121
Alignment:
Q  41 cagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaa 140  Q
    ||||||||||||||||| || | ||||| |||||||||||||||  || || ||||||| ||  |||||||||| |||| | |||||| |||||||||||    
T  48886240 cagactttcaacatgtttaaacctttcatcacctctctcctcttctctaattttcaataaccctctccaatgatttcaataggttgaaaatggcattcaa 48886141  T
Q  141 caagccattgtaaatggtct 160  Q
     ||||||||||| |||||||    
T  48886140 taagccattgtagatggtct 48886121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 49406742 - 49406623
Alignment:
Q  41 cagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaa 140  Q
    |||| |||||||||||| |||| ||||| ||||||| |||||||  ||||| ||||||| ||  |||||||| | |||| |||||||| |||||||||||    
T  49406742 cagaatttcaacatgtttaaccctttcatcacctctttcctcttctctcattttcaataccccgctccaatggtttcaatatgttgaaaatggcattcaa 49406643  T
Q  141 caagccattgtaaatggtct 160  Q
     | |||||||||||||||||    
T  49406642 taggccattgtaaatggtct 49406623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 37182518 - 37182466
Alignment:
Q  108 caatgatctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 160  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  37182518 caatggtctcaacatgttgaatatggcattcaacaagccattgtaagtggtct 37182466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 12975490 - 12975610
Alignment:
Q  42 agactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaac 141  Q
    |||||||||||||||| || | ||||| ||||||| |||||||  ||||| |||||||  |  ||||||| || |||| | |||||| || ||||||||     
T  12975490 agactttcaacatgtttaaacctttcatcacctctttcctcttcgctcattttcaataagccactccaataatttcaataggttgaaaatagcattcaat 12975589  T
Q  142 aagccattgtaaatggtctaa 162  Q
    ||||||||||| |||||||||    
T  12975590 aagccattgtagatggtctaa 12975610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 51999476 - 51999439
Alignment:
Q  45 ctttcaacatgttgaaccttttcaacacctctctcctc 82  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  51999476 ctttcaacatgttgaacctattcaacacctctttcctc 51999439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 160
Target Start/End: Complemental strand, 45548950 - 45548792
Alignment:
Q  2 caagcagacaagcgtaacaatccacgtgtcatggcggtgcagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagc 101  Q
    ||||||| ||| |||||||| ||||||||||  ||||  ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  45548950 caagcagccaatcgtaacaagccacgtgtcaatgcgggccaggctttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcaatagt 45548851  T
Q  102 ctcctccaatgatctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 160  Q
    ||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  45548850 ctcctccaatagtctcaacatgttgaatatggtattcaacaagccattgtaaatggtct 45548792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 20354845 - 20354966
Alignment:
Q  41 cagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaa 140  Q
    ||||||||||||||  | || | ||||| |||||||||||||||||||||| ||||||| ||| ||||||| || ||||||| ||||| || || |||||    
T  20354845 cagactttcaacatacttaatcctttcatcacctctctcctctttcctcattttcaatacccttctccaatcatttcaacatattgaaaattgctttcaa 20354944  T
Q  141 caagccattgtaaatggtctaa 162  Q
     |||||||||||  ||||||||    
T  20354945 taagccattgtaggtggtctaa 20354966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 38352270 - 38352391
Alignment:
Q  41 cagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaa 140  Q
    ||||||||||||||  | || | ||||| ||||||||||||||| |||||| ||||||| ||| ||||||| || |||| || ||||| || || |||||    
T  38352270 cagactttcaacatacttaatcctttcatcacctctctcctcttccctcattttcaatacccttctccaatcatttcaaaatattgaaaattgctttcaa 38352369  T
Q  141 caagccattgtaaatggtctaa 162  Q
    |||||||||| | |||||||||    
T  38352370 caagccattggagatggtctaa 38352391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 30720747 - 30720799
Alignment:
Q  108 caatgatctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 160  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  30720747 caatggtctcaacatgttgaatatggcattcaacaagccattgtaagtggtct 30720799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 41 - 150
Target Start/End: Original strand, 39770272 - 39770381
Alignment:
Q  41 cagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaa 140  Q
    ||||||||||||||  | || | ||||| ||| |||||||||||||||||| ||||||| ||| || |||| || ||||||| ||||| || || |||||    
T  39770272 cagactttcaacatacttaatcctttcatcacgtctctcctctttcctcattttcaatacccttcttcaatcatttcaacatattgaaaattgctttcaa 39770371  T
Q  141 caagccattg 150  Q
    ||||||||||    
T  39770372 caagccattg 39770381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 38970715 - 38970823
Alignment:
Q  50 aacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaacaagccatt 149  Q
    |||||||| |||| ||||| ||||||  |||||||  ||||| ||||||| ||  |||||||  | |||| |||||||| ||||||||||| | ||||||    
T  38970715 aacatgtttaaccctttcatcacctccgtcctcttctctcattttcaataccccactccaatagtttcaatatgttgaaaatggcattcaataggccatt 38970814  T
Q  150 gtaaatggt 158  Q
    |||||||||    
T  38970815 gtaaatggt 38970823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 12117039 - 12117129
Alignment:
Q  70 cacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaacaagccattgtaaatggtct 160  Q
    ||||||| |||||||  ||||| ||||||| ||  || ||||| | |||| |||||||| ||||| ||||| | |||||||||||||||||    
T  12117039 cacctctttcctcttctctcattttcaataccccactacaatggtttcaatatgttgaaaatggccttcaataggccattgtaaatggtct 12117129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 65808 - 65711
Alignment:
Q  65 ttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaacaagccattgtaaatggtctaa 162  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  65808 ttcaacacctctctcctcttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatgacattcaacaaaccattgtaaatggtctaa 65711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 7762600 - 7762481
Alignment:
Q  41 cagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaa 140  Q
    ||||||||||||||  | || | ||||| | ||||||||||||| |||||| ||||||| ||| |||||||||| ||||||| ||||| |||||||||||    
T  7762600 cagactttcaacatacttaaacctttcatcgcctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatggcattcaa 7762501  T
Q  141 caagccattgtaaatggtct 160  Q
    ||||||||||||||||||||    
T  7762500 caagccattgtaaatggtct 7762481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 150
Target Start/End: Original strand, 17486458 - 17486567
Alignment:
Q  41 cagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaa 140  Q
    ||||||||||||||  | || | || || ||||||||||||||| |||||| ||||||| ||| ||||||| || ||||||| || || || || |||||    
T  17486458 cagactttcaacatacttaatccttccatcacctctctcctcttccctcattttcaatacccttctccaatcatttcaacatattaaaaattgctttcaa 17486557  T
Q  141 caagccattg 150  Q
    ||||||||||    
T  17486558 caagccattg 17486567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 5144777 - 5144661
Alignment:
Q  46 tttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaacaagc 145  Q
    |||||| ||||| |||| ||||| ||||||| |||||||  ||||| ||||||| ||  ||| |||  | |||| || ||||| ||||||||||| | ||    
T  5144777 tttcaatatgtttaaccctttcatcacctctttcctcttctctcattttcaatatccctctctaatcgtttcaatatattgaaaatggcattcaataggc 5144678  T
Q  146 cattgtaaatggtctaa 162  Q
    |||||||||||||||||    
T  5144677 cattgtaaatggtctaa 5144661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 13151019 - 13150908
Alignment:
Q  46 tttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaacaagc 145  Q
    |||||||||||| |||||||||| ||||||| || ||||  ||||| ||||||| ||  ||  |||||| |||| || ||||| ||||||||||| |  |    
T  13151019 tttcaacatgtttaaccttttcatcacctctttcatcttctctcattttcaataccccactataatgatttcaatatattgaaaatggcattcaatagac 13150920  T
Q  146 cattgtaaatgg 157  Q
    ||||||| ||||    
T  13150919 cattgtatatgg 13150908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 45364161 - 45364261
Alignment:
Q  64 tttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaacaagccattgtaaatggtctaag 163  Q
    ||||| || |||||||||||| |||||| ||||||| ||| |||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||||||||    
T  45364161 tttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaatgacattcaacaagccattgtaaatggtctaag 45364260  T
Q  164 a 164  Q
    |    
T  45364261 a 45364261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1905 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold1905
Description:

Target: scaffold1905; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 841 - 735
Alignment:
Q  44 actttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatgatctcaacatgttgaatatggcattcaacaa 143  Q
    |||||||||||  | || | ||||| ||||||||||||||| |||||| ||||||| ||| ||||||| || ||||||| ||||| || || ||||||||    
T  841 actttcaacatacttaatcctttcatcacctctctcctcttccctcattttcaatacccttctccaatcatttcaacatattgaaaattgctttcaacaa 742  T
Q  144 gccattg 150  Q
    |||||||    
T  741 gccattg 735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1905; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 588 - 625
Alignment:
Q  45 ctttcaacatgttgaaccttttcaacacctctctcctc 82  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  588 ctttcaacatgttgaacttgttcaacacctctctcctc 625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 106495 - 106566
Alignment:
Q  41 cagactttcaacatgttgaaccttttcaacacctctctcctctttcctcatattcaatagcctcctccaatg 112  Q
    |||| |||||||  |||||| | ||||| |||||||||||||||||||||| |||||||||| |||||||||    
T  106495 cagattttcaactagttgaaacatttcatcacctctctcctctttcctcattttcaatagccccctccaatg 106566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University