View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_high_36 (Length: 274)
Name: NF1490_high_36
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 9366900 - 9367148
Alignment:
| Q |
12 |
aatttaaaagaaaatgtagaaataaacaaaaccaaaacgtatttctatatcgttctttcctcttctttcagacacgacttacacacaccaaaatcccaaa |
111 |
Q |
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| T |
9366900 |
aatttaaaaaaaaatgtagaaataaacaaaatcaaaacgtatttctatatcgttctttcctcttctttcagacacgacttacacacaccaaaatcccaaa |
9366999 |
T |
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| Q |
112 |
-ccaccattctccaaattgcacgccgccaccacccaccgccgggcactagtgaccagcccaccaacgacggcgacgcaccaccggtccaccacacaagtc |
210 |
Q |
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| T |
9367000 |
accaccattctccaaattgcacgccgctgccacccaccgtcgggcaccaatgaccagcccaccaccgacggcgacgcaccaccggtccaccacacaagtc |
9367099 |
T |
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| Q |
211 |
accatcacaacatctctattttaggtcatttatctttttccttcttttt |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9367100 |
accatcacaacatctctattttaggtcatttatctttttccttcttttt |
9367148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 47509345 - 47509304
Alignment:
| Q |
218 |
caacatctctattttaggtcatttatctttttccttcttttt |
259 |
Q |
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|||||||||||||||||||||| | |||||||||||||||| |
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| T |
47509345 |
caacatctctattttaggtcatctcactttttccttcttttt |
47509304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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