View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1490_high_52 (Length: 234)
Name: NF1490_high_52
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_high_52 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 15369289 - 15369070
Alignment:
| Q |
1 |
tctctctcgaaattacacgtgtacttatcttgatcccacacgtgtcattttccctcgctcttctttcatttcacggttacaattccggcgaaccagcgtt |
100 |
Q |
| |
|
||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15369289 |
tctctctcgaaatcacacgtgtccttatcttgaacccacacgtgtcattttccctcgctcttctttcatttcacggttacaattccggcgaaccagcgtt |
15369190 |
T |
|
| Q |
101 |
aagagtctcctcaccgtacacggcggtggattcatcccggcggccgcgaagaaagaagtacgtggaagcacaagcatagttgatgaaattgaggaagaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15369189 |
aagagtctcctcaccgtacacggcggtggattcatcccggcggccgcgaagaaagaagtacgtggaagcacaagcatagttgatgaaattgaggaagaat |
15369090 |
T |
|
| Q |
201 |
tcgacgaagaaggtgaatat |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
15369089 |
tcgacgaagaaggtgaatat |
15369070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 45 - 220
Target Start/End: Complemental strand, 49398789 - 49398614
Alignment:
| Q |
45 |
tcattttccctcgctcttctttcatttcacggttacaattccggcgaaccagcgttaagagtctcctcaccgtacacggcggtggattcatcccggcggc |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | | |||||||||||||| ||||| ||||| || |
|
|
| T |
49398789 |
tcattttccctcgctcttctttcatttcacggttacaattccgacgaaccagcgttaagagtatgcgcaccgtacacggcgacatgttcattccggcagc |
49398690 |
T |
|
| Q |
145 |
cgcgaagaaagaagtacgtggaagcacaagcatagttgatgaaattgaggaagaattcgacgaagaaggtgaatat |
220 |
Q |
| |
|
| | |||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
49398689 |
cacaaagaaagaagtacgcggaagcgcaagcatagttgatgaaattgaggaagagttcgatgaagaagttgaatat |
49398614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University