View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_high_7 (Length: 520)
Name: NF1490_high_7
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 36162388 - 36162795
Alignment:
| Q |
18 |
caacatagccttaataccatatatagcagacataaaacccaagcaacaaagaaa-gacagcacaaaactacaccaagcaagaatagagaccaaaagtgct |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| ||||| |
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| T |
36162388 |
caacatagccttaataccatatatagcagacatcaaacccaagcaacaaagaaaagacagcacaaaa----------------tagagaccaaacgtgct |
36162471 |
T |
|
| Q |
117 |
ccacaagaaacacgagcatcaatctacaagagcatcttcaactgtagatttgcttccacttagcacactttctatattattcaaagcattctttgcagct |
216 |
Q |
| |
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|| ||||||||| | |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36162472 |
ccgcaagaaacataaacatcaaactacaagagcatcttcaactgtagatgtgcttccacttagcacactttctatattattcaaagcattctttgcagct |
36162571 |
T |
|
| Q |
217 |
ctataacgtgcaatgtctttcttagagccataagtgcctcttccaacaaatttctcatctataaagacatcaatgttcatagattctttccacaagtcta |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36162572 |
ctataacgtgcaatgtctttcttagagccataagtgcctcttccaacaaatttctcatttataaagacatcaatgttcatagattctttccacaagtcta |
36162671 |
T |
|
| Q |
317 |
cgaattgtaaattcaattttttcttctgacaaacttcagtcaactctgtgaggggatgcatctcgaaagcgtctggctcaattataggtttaagtagttt |
416 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36162672 |
cgaattgtaaattcaattttttcttctgacaaacttcagtcaactctgtgaggggatgcatctcgaaagcgtctggctcaattataggttcaagtagttt |
36162771 |
T |
|
| Q |
417 |
tctgaaaatctgtccaaaaaattg |
440 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
36162772 |
tctgaaaatctgtccaaaaaattg |
36162795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 94 - 433
Target Start/End: Original strand, 36156417 - 36156757
Alignment:
| Q |
94 |
caagaatagagaccaaaa-gtgctccacaagaaacacgagcatcaatctacaagagcatcttcaactgtagatttgcttccacttagcacactttctata |
192 |
Q |
| |
|
|||||| ||||||||||| |||||| ||||||||| | ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |
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|
| T |
36156417 |
caagaagagagaccaaaaagtgctcatcaagaaacataaacatcaatctacaagagcatcttcaactatagatgtgcttccacttagcaccctttctata |
36156516 |
T |
|
| Q |
193 |
ttattcaaagcattctttgcagctctataacgtgcaatgtctttcttagagccataagtgcctcttccaacaaatttctcatctataaagacatcaatgt |
292 |
Q |
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|||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
36156517 |
ttatccaaagcattttttgcagctctataatgtgcaatgtctttcttagagccataagtgcctcttccaacaaatttctcattgatgaagacatcaatgt |
36156616 |
T |
|
| Q |
293 |
tcatagattctttccacaagtctacgaattgtaaattcaattttttcttctgacaaacttcagtcaactctgtgaggggatgcatctcgaaagcgtctgg |
392 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| | ||||||| |||| | | || ||| |
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|
| T |
36156617 |
tcatagatttttcccacaagtctacgaattgtaaattcaattttttcttctgacaaacttcttgaagctctgaaacgggatgcttctcaacggtgtttgg |
36156716 |
T |
|
| Q |
393 |
ctcaattataggtttaagtagttttctgaaaatctgtccaa |
433 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||| |||| |
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|
| T |
36156717 |
ctcaattataggttcaagtaattttctgaaaacctggccaa |
36156757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 354
Target Start/End: Original strand, 36146632 - 36146801
Alignment:
| Q |
185 |
tttctatattattcaaagcattctttgcagctctataacgtgcaatgtctttcttagagccataagtgcctcttccaacaaatttctcatctataaagac |
284 |
Q |
| |
|
|||| ||||| | ||||||||| ||||| || |||| ||||||| |||||||||||||||||| || ||||||||||| | ||||| ||||| ||| |
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|
| T |
36146632 |
tttccatattttccaaagcattttttgctgccctattgtgtgcaatttctttcttagagccataaacaccacttccaacaaactcctcatttataaggac |
36146731 |
T |
|
| Q |
285 |
atcaatgttcatagattctttccacaagtctacgaattgtaaattcaattttttcttctgacaaacttca |
354 |
Q |
| |
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||||| |||||| ||||||||||| ||| ||||||||| || | ||||||| |||||||||||| |
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|
| T |
36146732 |
ttcaattctcatagtctctttccacaaatctctgaattgtaacttgagacttttcttttgacaaacttca |
36146801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 129; Significance: 2e-66; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 193 - 433
Target Start/End: Complemental strand, 26525989 - 26525749
Alignment:
| Q |
193 |
ttattcaaagcattctttgcagctctataacgtgcaatgtctttcttagagccataagtgcctcttccaacaaatttctcatctataaagacatcaatgt |
292 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
26525989 |
ttatccaaagcattttttgcagctctataatgtacaatgtctttcttagagccataagtgcctcttccaacaaatttctcattgatgaagacatcaatgt |
26525890 |
T |
|
| Q |
293 |
tcatagattctttccacaagtctacgaattgtaaattcaattttttcttctgacaaacttcagtcaactctgtgaggggatgcatctcgaaagcgtctgg |
392 |
Q |
| |
|
|||| |||| || |||||||||||| ||||||||||| |||||||||||||||||||||||| | |||||||| ||||||| |||| | | |||||| |
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|
| T |
26525889 |
tcattgatttttcccacaagtctacaaattgtaaattaaattttttcttctgacaaacttcatgaagctctgtgacgggatgcttctcaaccgtgtctgg |
26525790 |
T |
|
| Q |
393 |
ctcaattataggtttaagtagttttctgaaaatctgtccaa |
433 |
Q |
| |
|
|| |||||||||| |||||||||| |||||| ||| |||| |
|
|
| T |
26525789 |
ttcgattataggttcaagtagttttttgaaaacctggccaa |
26525749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 354
Target Start/End: Complemental strand, 26530390 - 26530221
Alignment:
| Q |
185 |
tttctatattattcaaagcattctttgcagctctataacgtgcaatgtctttcttagagccataagtgcctcttccaacaaatttctcatctataaagac |
284 |
Q |
| |
|
|||| ||||| | |||| |||| ||||| || |||| |||||||| ||||||||||| |||||| || ||||||||||| | ||||| ||||| ||| |
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|
| T |
26530390 |
tttccatattttgcaaaacattttttgctgccctattgcgtgcaatttctttcttagaaccataaacaccacttccaacaaactcctcatttataaggac |
26530291 |
T |
|
| Q |
285 |
atcaatgttcatagattctttccacaagtctacgaattgtaaattcaattttttcttctgacaaacttca |
354 |
Q |
| |
|
|||| ||||||| ||||||||||| ||| ||||||||| || | | |||| || |||||||||||| |
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|
| T |
26530290 |
ttcaactctcatagactctttccacaaatctctgaattgtaacttgagtcttttattgtgacaaacttca |
26530221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 26526330 - 26526274
Alignment:
| Q |
95 |
aagaatagagaccaaaagtgctccacaagaaacacgagcatcaatctacaagagcat |
151 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| | ||||||||||||||||||| |
|
|
| T |
26526330 |
aagaaaagagaccaaaagtgctcccaaagaaacataaacatcaatctacaagagcat |
26526274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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