View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1490_low_1 (Length: 774)

Name: NF1490_low_1
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1490_low_1
NF1490_low_1
[»] chr1 (5 HSPs)
chr1 (15-774)||(31322165-31322926)
chr1 (563-742)||(31321268-31321447)
chr1 (569-712)||(34650747-34650890)
chr1 (134-194)||(42563705-42563765)
chr1 (285-334)||(17833437-17833486)
[»] chr5 (6 HSPs)
chr5 (568-721)||(38997568-38997722)
chr5 (563-719)||(13163522-13163675)
chr5 (640-742)||(37498509-37498611)
chr5 (576-697)||(28803991-28804111)
chr5 (608-711)||(37497494-37497596)
chr5 (569-624)||(28804602-28804657)
[»] chr8 (5 HSPs)
chr8 (563-743)||(2687392-2687573)
chr8 (596-728)||(27824119-27824251)
chr8 (571-622)||(27823712-27823763)
chr8 (639-691)||(27166985-27167037)
chr8 (640-685)||(17097344-17097389)
[»] chr6 (1 HSPs)
chr6 (570-743)||(28636113-28636291)
[»] chr7 (5 HSPs)
chr7 (634-703)||(3697875-3697944)
chr7 (570-663)||(3704689-3704782)
chr7 (569-685)||(35711282-35711398)
chr7 (618-733)||(28686756-28686870)
chr7 (586-671)||(39705007-39705092)
[»] chr2 (6 HSPs)
chr2 (574-742)||(12028377-12028538)
chr2 (570-656)||(18160734-18160820)
chr2 (563-648)||(18160636-18160721)
chr2 (570-656)||(18308481-18308567)
chr2 (297-335)||(21612240-21612278)
chr2 (563-648)||(18159720-18159805)
[»] chr4 (6 HSPs)
chr4 (587-702)||(8332215-8332330)
chr4 (563-614)||(8331535-8331586)
chr4 (618-691)||(7500711-7500784)
chr4 (591-671)||(7491617-7491697)
chr4 (591-666)||(36139553-36139628)
chr4 (618-691)||(7492680-7492753)
[»] scaffold0015 (1 HSPs)
scaffold0015 (285-334)||(47845-47894)


Alignment Details
Target: chr1 (Bit Score: 663; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 15 - 774
Target Start/End: Complemental strand, 31322926 - 31322165
Alignment:
Q  15 tatactaatcaaagtagaaatagaccagttcttttataagcttcaaattcaaataattgtaaacggtttatactcttaagtagttatcgaagatatattt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31322926 tatactaatcaaagtagaaatagaccagttcttttataagctttatattcaaataattgtaaacggtttatactcttaagtagttatcgaagatatattt 31322827  T
Q  115 caacatataagttttttcattttgttattatgttactgatacaaagttttcaccgtcgtttaccagtgattaatcttcattggaaaatcggtgaggtaca 214  Q
    ||||||||||||| ||||||||||||| ||||||| || |||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||| |    
T  31322826 caacatataagttgtttcattttgttactatgttattggtacaaagttttcactgtcgtttaccagtaactaatcttcattggaaaatcggtgaggtata 31322727  T
Q  215 taaggtggattttctcctttcaatcgagttttctccatacgcaagagatgatgattgaacccttaaccagttgctgaaggtgtccaaatcccttatcact 314  Q
    |||||||| || || ||||||||||||||||||||| ||| || ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  31322726 taaggtgggttctcccctttcaatcgagttttctccttacacaggagatgatgattgaacccttaaccacttgctgaaggtgttcaaatcccttatcact 31322627  T
Q  315 tggatcaatccattattggtaggtcggtggtataagttataacgctaaaaaagtatcaagaagaatatttaatttagagtttgatgcatgttgatattag 414  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31322626 tggatcaattcattattgataggtcggtggtataagttataacgctaaaaaagtatcaagaagaatatttaatttagagtttgatgcatgttgatattag 31322527  T
Q  415 tttccccatcccttgactaatttaccactaacatttgcctataaaaaatcataatcaattagtgtttaatggatcatggggctaggggtgcatacgacta 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31322526 tttccccatcccttgactaatttaccactaacatttgcctataaaaaatcataatcaattagtgtttaatggatcatggggctaggggtgcatacgacta 31322427  T
Q  515 agatgactaaatcttacataatatacttggagtctaattgtgtagcataaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcc 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31322426 agatgactaaatcttacataatatacttggagtctaattgtgtagcataaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcc 31322327  T
Q  615 tttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaattcaca--tatagatcataaaactgtaaaattc 712  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  31322326 tttatttttatcttagtcgcacaccttcaccatttcttctacccatatcctccatttctgctataaattcacatatatagatcataaaactgtaaaattc 31322227  T
Q  713 tcatgatttccacaaaagtatggttctttttggttctcattcgtaacaccaatcctacaatt 774  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31322226 tcatgatttccacaaaagcatggttctttttggttctcattcgtaacaccaatcctacaatt 31322165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 563 - 742
Target Start/End: Original strand, 31321268 - 31321447
Alignment:
Q  563 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatat 662  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||||||||||| |||||| ||||||| | ||||||||||||||||| |||||||||||    
T  31321268 aaattaaaatttaaaaaccttggtccttccatctttttcctgtctttcttcctctattttcatcttagccgcacaccttcaccatttcgtctacccatat 31321367  T
Q  663 cctccatttctgctataaattcacatatagatcataaaactgtaaaattctcatgatttccacaaaagtatggttctttt 742  Q
    |||||||||||| || || |||||| ||||||||||||||| ||||||| || |||||| |||||||| |||||||||||    
T  31321368 cctccatttctgttaaaatttcacagatagatcataaaactataaaattttcgtgattttcacaaaagcatggttctttt 31321447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 569 - 712
Target Start/End: Original strand, 34650747 - 34650890
Alignment:
Q  569 aaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctcca 668  Q
    |||||| |||| |||||||||| |||||  ||| |||||||||| || ||||||||| |||||  |||| ||||||||||||||||||||||| |||  |    
T  34650747 aaattttaaaatcttggttcttacatctatttcatgtctttctttctctatttttattttagttgcacatcttcaccatttcttctacccatacccttta 34650846  T
Q  669 tttctgctataaattcacatatagatcataaaactgtaaaattc 712  Q
    ||||||||| ||||||| | || |||||||| || |||||||||    
T  34650847 tttctgctaaaaattcatagattgatcataataccgtaaaattc 34650890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 42563705 - 42563765
Alignment:
Q  134 ttttgttattatgttactgatacaaagttttcaccgtcgtttaccagtgattaatcttcat 194  Q
    |||| ||| |||| || |||||||||||||| ||| ||||||| |||||||||||||||||    
T  42563705 tttttttactatgatattgatacaaagtttttaccctcgtttaacagtgattaatcttcat 42563765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 17833486 - 17833437
Alignment:
Q  285 ttgctgaaggtgtccaaatcccttatcacttggatcaatccattattggt 334  Q
    ||||| |||| |||||||||||||| ||||||||| |||||||| |||||    
T  17833486 ttgcttaaggggtccaaatcccttaccacttggataaatccattgttggt 17833437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 7e-39; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 568 - 721
Target Start/End: Original strand, 38997568 - 38997722
Alignment:
Q  568 aaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctcc 667  Q
    |||||||||||||||||||||||||||||| ||| ||| |||||||||  ||||| ||||||||| ||||| |||||||||||||||||| ||||||||     
T  38997568 aaaatttaaaaaccttggttcttccatctttttcctgtttttcttcctccattttcatcttagtcgcacacattcaccatttcttctacctatatcctcg 38997667  T
Q  668 atttctgct-ataaattcacatatagatcataaaactgtaaaattctcatgattt 721  Q
    ||||||||| | ||| ||||||||||||||||||| ||| ||||||  |||||||    
T  38997668 atttctgctaaaaaaatcacatatagatcataaaattgtcaaattccgatgattt 38997722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 563 - 719
Target Start/End: Complemental strand, 13163675 - 13163522
Alignment:
Q  563 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatat 662  Q
    ||||| ||||||||||| ||| |||||| || ||| | |||||||||||||||| ||||| | ||||  | ||||||||||| |||| ||||||| ||||    
T  13163675 aaattcaaatttaaaaatcttagttctttca-cttat-cgtgtctttcttccttcattttcaacttaaccgcacaccttcacaattt-ttctacctatat 13163579  T
Q  663 cctccatttctgctataaattcacatatagatcataaaactgtaaaattctcatgat 719  Q
    ||||||| | ||||| ||||||||||||||||||||||||| |||||||| ||||||    
T  13163578 cctccatatttgctaaaaattcacatatagatcataaaactttaaaattcacatgat 13163522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 640 - 742
Target Start/End: Complemental strand, 37498611 - 37498509
Alignment:
Q  640 ttcaccatttcttctacccatatcctccatttctgctataaattcacatatagatcataaaactgtaaaattctcatgatttccacaaaagtatggttct 739  Q
    |||||||||||||||| | || |||||||||| ||||| ||||||||| |||||||||||||||||||||||| |||||||| |||||||  ||| ||||    
T  37498611 ttcaccatttcttctagctatgtcctccatttatgctaaaaattcacaaatagatcataaaactgtaaaattcccatgattttcacaaaaacatgcttct 37498512  T
Q  740 ttt 742  Q
    |||    
T  37498511 ttt 37498509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 576 - 697
Target Start/End: Original strand, 28803991 - 28804111
Alignment:
Q  576 aaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgc 675  Q
    ||||||||| |||||||||||| ||| | ||||||||| |  ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||     
T  28803991 aaaaccttgattcttccatctttttcctatctttcttcgtcaattttcatcttagtcgcacaccttcaccatttcttctacccatatcc-ccatttctgt 28804089  T
Q  676 tataaattcacatatagatcat 697  Q
     | ||||||||| | |||||||    
T  28804090 caaaaattcacaaagagatcat 28804111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 608 - 711
Target Start/End: Original strand, 37497494 - 37497596
Alignment:
Q  608 ttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaattcacatatagatcataaaactgtaa 707  Q
    ||||||||  ||||| ||||||||  ||||| |||||||||||||||| ||||||| ||||||| ||||| || |||||  |||||||||||| | ||||    
T  37497494 ttcttcctccattttcatcttagttgcacactttcaccatttcttctatccatatcatccatttatgcta-aatttcaccgatagatcataaagccgtaa 37497592  T
Q  708 aatt 711  Q
    ||||    
T  37497593 aatt 37497596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 624
Target Start/End: Complemental strand, 28804657 - 28804602
Alignment:
Q  569 aaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttattttta 624  Q
    ||||||||||| ||| ||||||||||||||||  |||||||||||||  |||||||    
T  28804657 aaatttaaaaatcttagttcttccatcttctttttgtctttcttcctccattttta 28804602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 563 - 743
Target Start/End: Original strand, 2687392 - 2687573
Alignment:
Q  563 aaattaaaatttaaaaaccttgg-ttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccata 661  Q
    ||||| ||||||||||||||||| || ||| |||| ||||  |||||||||| |  ||||| ||||||| | ||||||||||||||||    ||||||||    
T  2687392 aaattcaaatttaaaaaccttgggtttttcaatct-cttccggtctttcttcttccattttcatcttagccgcacaccttcaccattttcaatacccata 2687490  T
Q  662 tcctccatttctgctataaattcacatatagatcataaaactgtaaaattctcatgatttccac-aaaagtatggttcttttt 743  Q
    |||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||||| ||| ||||| ||||||||||||    
T  2687491 tcctccatttctgctaaaaattcatacatagatcataaaactgtaaaattcccatgattttcacaaaaagcatggttcttttt 2687573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 596 - 728
Target Start/End: Complemental strand, 27824251 - 27824119
Alignment:
Q  596 ttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaattcacatatagatc 695  Q
    |||||| ||||||| |||||  ||||||||||| | | ||||| |||||||||| |||||| |||||| || | |||| ||  ||||||||| |||||||    
T  27824251 ttcttcatgtcttttttcctccatttttatctttgccgcacacattcaccatttattctactcatatcttcgaattctactgaaaattcacaaatagatc 27824152  T
Q  696 ataaaactgtaaaattctcatgatttccacaaa 728  Q
    |||| ||| ||||||||||||||| || |||||    
T  27824151 ataatactttaaaattctcatgatatctacaaa 27824119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 571 - 622
Target Start/End: Original strand, 27823712 - 27823763
Alignment:
Q  571 atttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttt 622  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  27823712 atttaaaaaccttggttcttccatcttcttcttgtctttcttccttcatttt 27823763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 639 - 691
Target Start/End: Complemental strand, 27167037 - 27166985
Alignment:
Q  639 cttcaccatttcttctacccatatcctccatttctgctataaattcacatata 691  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||||| |||||    
T  27167037 cttcaccatttcttctacccatatcttccatttatgctaaaaattcatatata 27166985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 640 - 685
Target Start/End: Original strand, 17097344 - 17097389
Alignment:
Q  640 ttcaccatttcttctacccatatcctccatttctgctataaattca 685  Q
    |||| ||||||||||||||||||||||||||  ||||| |||||||    
T  17097344 ttcaacatttcttctacccatatcctccattcatgctaaaaattca 17097389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 570 - 743
Target Start/End: Complemental strand, 28636291 - 28636113
Alignment:
Q  570 aatttaaaaaccttggttcttccatcttcttcgt----gtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcct 665  Q
    ||||||||||| |||||| || |||||||||| |    || |||||||||  ||||| ||||||||| ||||||||||||||||||| |||||| |||||    
T  28636291 aatttaaaaacattggttatttcatcttcttcatatatgtatttcttcctccattttcatcttagtctcacaccttcaccatttcttttaccca-atcct 28636193  T
Q  666 ccatttctgctataaattca--catatagatcataaaactgtaaaattctcatgatttccacaaaagtatggttcttttt 743  Q
    |||||| ||||| |||   |   | ||| ||||||||||| |||||||| |||||||||||||||||||| ||| |||||    
T  28636192 ccatttttgctaaaaaaaaaataacataaatcataaaactataaaattcccatgatttccacaaaagtatagtttttttt 28636113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 634 - 703
Target Start/End: Original strand, 3697875 - 3697944
Alignment:
Q  634 cacaccttcaccatttcttctacccatatcctccatttctgctataaattcacatatagatcataaaact 703  Q
    ||||||||||| |||| ||||||||||||| ||||||||||||| ||||||||| |||||||||||||||    
T  3697875 cacaccttcactatttattctacccatatcgtccatttctgctaaaaattcacagatagatcataaaact 3697944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 570 - 663
Target Start/End: Original strand, 3704689 - 3704782
Alignment:
Q  570 aatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatc 663  Q
    ||||||||||| |||| ||||||||||||||| |||||||||||||  ||||    ||||||  |||||||||| |||||||||||||||||||    
T  3704689 aatttaaaaacattggctcttccatcttcttcatgtctttcttcctccatttcccccttagttgcacaccttcagcatttcttctacccatatc 3704782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 569 - 685
Target Start/End: Complemental strand, 35711398 - 35711282
Alignment:
Q  569 aaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctcca 668  Q
    |||||||||||| || || |||||||||||||| |||||||||||||   |||| | ||||    || ||||||||| ||||||||| |||| |||||||    
T  35711398 aaatttaaaaacttttgtccttccatcttcttcatgtctttcttcctcccttttcaacttacctgcataccttcaccgtttcttctatccatttcctcca 35711299  T
Q  669 tttctgctataaattca 685  Q
    ||||||||| |||||||    
T  35711298 tttctgctaaaaattca 35711282  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 618 - 733
Target Start/End: Original strand, 28686756 - 28686870
Alignment:
Q  618 atttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaattcacatatagatcataaaactgtaaaattctcatg 717  Q
    |||||||||||||   |||||||||| |||| ||||||| ||||||| ||||||  |||  |||||| || || ||||||||||||||||||||  ||||    
T  28686756 atttttatcttagcagcacaccttcatcatt-cttctactcatatcccccattttagctgaaaattcgcagatggatcataaaactgtaaaatttccatg 28686854  T
Q  718 atttccacaaaagtat 733  Q
    |||||| |||||||||    
T  28686855 atttcctcaaaagtat 28686870  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 586 - 671
Target Start/End: Complemental strand, 39705092 - 39705007
Alignment:
Q  586 ttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccattt 671  Q
    |||||||||| ||||| ||||||||||||   ||||| ||||| | | ||||  ||||||||||||| ||||||||| ||||||||    
T  39705092 ttcttccatcctcttcatgtctttcttccaccattttcatcttggccgcacatattcaccatttcttatacccatattctccattt 39705007  T

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Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 574 - 742
Target Start/End: Original strand, 12028377 - 12028538
Alignment:
Q  574 taaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttct 673  Q
    ||||||| ||| |||||||||||||||| ||||||||| | |  ||||| ||||||| | |||||||| |  ||||||| ||  ||||||||||||||||    
T  12028377 taaaaacattgtttcttccatcttcttcatgtctttctac-tccattttcatcttagccgcacacctttattatttcttataaacatatcctccatttct 12028475  T
Q  674 gctataaattcacatatagatcataaaactgtaaaattctcatgatttccacaaaagtatggttctttt 742  Q
    |||| ||||| ||| ||||||||      ||||||||||  |||||||||||||||  |||||||||||    
T  12028476 gctaaaaatttacaaatagatca------tgtaaaattcatatgatttccacaaaaacatggttctttt 12028538  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 570 - 656
Target Start/End: Complemental strand, 18160820 - 18160734
Alignment:
Q  570 aatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctac 656  Q
    ||||||||||  | |||||||||||||||||| | ||||| ||||   ||||| ||||||| | |||| ||||||||||||||||||    
T  18160820 aatttaaaaatttcggttcttccatcttcttcctatcttttttccaccattttcatcttagccgcacatcttcaccatttcttctac 18160734  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 563 - 648
Target Start/End: Original strand, 18160636 - 18160721
Alignment:
Q  563 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatt 648  Q
    ||||| ||||||||||   |||||||||||||| ||||| ||||||||||||   ||||| ||  ||||| |||||||||||||||    
T  18160636 aaattcaaatttaaaatttttggttcttccatcatcttcctgtctttcttccaccattttcattgtagtcgcacaccttcaccatt 18160721  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 570 - 656
Target Start/End: Original strand, 18308481 - 18308567
Alignment:
Q  570 aatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctac 656  Q
    ||||||||||  | |||||||||||||||||| | ||||||||||   ||||| |||||||   |||| ||| ||||||||||||||    
T  18308481 aatttaaaaatttcggttcttccatcttcttcctatctttcttccaccattttcatcttagctgcacatctttaccatttcttctac 18308567  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 21612240 - 21612278
Alignment:
Q  297 tccaaatcccttatcacttggatcaatccattattggta 335  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  21612240 tccaaatctcttatcacttggatcaatccattgttggta 21612278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 648
Target Start/End: Original strand, 18159720 - 18159805
Alignment:
Q  563 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatt 648  Q
    ||||| ||||||||||   |||||||||||||| ||||| | ||||||||||   ||||| ||  ||||| |||||||||||||||    
T  18159720 aaattcaaatttaaaatttttggttcttccatcatcttcctatctttcttccaccattttcattgtagtcgcacaccttcaccatt 18159805  T

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Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 587 - 702
Target Start/End: Complemental strand, 8332330 - 8332215
Alignment:
Q  587 tcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaattcac 686  Q
    |||||||||||||||   | ||||||||| |||||| ||||||| | ||||| |||| ||||||||||| |||||||  |||||||||||| ||||||||    
T  8332330 tcttccatcttcttccaatttttcttcctctattttcatcttagccacacactttcatcatttcttctatccatatcgaccatttctgctaaaaattcac 8332231  T
Q  687 atatagatcataaaac 702  Q
    | |||  |||||||||    
T  8332230 aaatatgtcataaaac 8332215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 563 - 614
Target Start/End: Original strand, 8331535 - 8331586
Alignment:
Q  563 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcc 614  Q
    ||||| |||||||||||| |||||||||||||||||||  ||||||||||||    
T  8331535 aaattcaaatttaaaaactttggttcttccatcttcttgttgtctttcttcc 8331586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 618 - 691
Target Start/End: Complemental strand, 7500784 - 7500711
Alignment:
Q  618 atttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaattcacatata 691  Q
    ||||| ||||||| | ||||  ||||| |||||||||||||||||||||||||  ||||| |||| ||||||||    
T  7500784 attttcatcttagccgcacatattcactatttcttctacccatatcctccattcatgctaaaaatccacatata 7500711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 671
Target Start/End: Original strand, 7491617 - 7491697
Alignment:
Q  591 ccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccattt 671  Q
    ||||||||||| | ||||||||||   ||||| ||||||||| ||||  |||||  ||||||||||||||||||| |||||    
T  7491617 ccatcttcttcatatctttcttccaccattttcatcttagtcgcacatattcacagtttcttctacccatatccttcattt 7491697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 666
Target Start/End: Complemental strand, 36139628 - 36139553
Alignment:
Q  591 ccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctc 666  Q
    ||||||||||| ||||||||||||   ||||| ||||||||| ||||  |||||||||||||| | | ||||||||    
T  36139628 ccatcttcttcatgtctttcttccaccattttaatcttagtcgcacatattcaccatttcttcaatctatatcctc 36139553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 691
Target Start/End: Complemental strand, 7492753 - 7492680
Alignment:
Q  618 atttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaattcacatata 691  Q
    ||||| ||||||| | ||||  ||||| |||||||||||||||||||||||||  ||||| || | ||||||||    
T  7492753 attttcatcttagccgcacatattcactatttcttctacccatatcctccattcatgctaaaactccacatata 7492680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 47894 - 47845
Alignment:
Q  285 ttgctgaaggtgtccaaatcccttatcacttggatcaatccattattggt 334  Q
    ||||| |||||| |||||| |||||||||||||| ||||||||| |||||    
T  47894 ttgcttaaggtgcccaaataccttatcacttggaccaatccattgttggt 47845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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