View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_10 (Length: 468)
Name: NF1490_low_10
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_10 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 22 - 468
Target Start/End: Complemental strand, 40724272 - 40723826
Alignment:
| Q |
22 |
ccaggtaccggaaagacattaatagcaagagctattgctaatgaaactggagctttcttcttttgtattaatggaccagagattatgtccaaaatggctg |
121 |
Q |
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|||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40724272 |
ccaggttctggaaagacattaatagcaagagctgttgctaatgaaactggagctttcttcttttgtattaatggaccagagattatgtccaaactggctg |
40724173 |
T |
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| Q |
122 |
gagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatctttattgatgaaattgattctattgcacccaagcg |
221 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40724172 |
gagagagtgaaagcaatcttaggaaagcgtttgaagaagcagaaaagaatgcaccatccatcatctttattgatgaaattgattctattgcacccaagcg |
40724073 |
T |
|
| Q |
222 |
ggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatcccgtgctcatgttattgtcatgggggcc |
321 |
Q |
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| T |
40724072 |
ggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatcccgtgctcatgttattgtcatgggggcc |
40723973 |
T |
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| Q |
322 |
actaatcgccccaatagcattgacccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgacttgaag |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40723972 |
actaatcgccccaatagcattgacccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgacttgaag |
40723873 |
T |
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| Q |
422 |
tccttcgcatacataccaaaaacatgaagctctctgatgatgtaagt |
468 |
Q |
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| T |
40723872 |
tccttcgcatacataccaaaaacatgaagctctctcatgatgtaagt |
40723826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 22 - 293
Target Start/End: Original strand, 40665794 - 40666066
Alignment:
| Q |
22 |
ccaggtaccggaaagacattaatagcaagagctattgctaatgaaactggagctttcttcttttgtattaatggaccagagattatgtccaaaatggctg |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40665794 |
ccaggtaccggaaagacattaatagcaagagctattgctaatgaaactggagctttcttcttttgtattaatggaccagagattatgtccaaactggctg |
40665893 |
T |
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| Q |
122 |
gagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatcttta-ttgatgaaattgattctattgcacccaagc |
220 |
Q |
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| T |
40665894 |
gagagagtgaaagcaatcttaggaaagcgtttgaagaagcagaaaagaatgcaccatccatcatctttatttgatgaaattgattctattgcacccaagc |
40665993 |
T |
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| Q |
221 |
gggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatc |
293 |
Q |
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| T |
40665994 |
gggagaagacaaacggtgaagttgaaagaaggattgtctcacaacttctgactcttatggatgggctagaatc |
40666066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 349 - 468
Target Start/End: Original strand, 40666102 - 40666221
Alignment:
| Q |
349 |
gcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgacttgaagtccttcgcatacataccaaaaacatga |
448 |
Q |
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| T |
40666102 |
gcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgacttgaagtccttcgcatacataccaaaaacatga |
40666201 |
T |
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| Q |
449 |
agctctctgatgatgtaagt |
468 |
Q |
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| T |
40666202 |
agctctctcatgatgtaagt |
40666221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 56 - 466
Target Start/End: Complemental strand, 41093065 - 41092655
Alignment:
| Q |
56 |
ttgctaatgaaactggagctttcttcttttgtattaatggaccagagattatgtccaaaatggctggagagagtgaaagcaatcttaggaaagcatttga |
155 |
Q |
| |
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|||| |||||||| || || ||||| || || |||||||| || ||||| ||||| ||| | ||||| ||||||||||||||||| ||||| |||||||| |
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| T |
41093065 |
ttgcaaatgaaacaggtgccttctttttctgcattaatggccctgagataatgtcgaaacttgctggtgagagtgaaagcaatctaaggaaggcatttga |
41092966 |
T |
|
| Q |
156 |
agaagcagaaaagaatgcaccatccatcatctttattgatgaaattgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggatt |
255 |
Q |
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||||| || ||||||||||| |||||||||||||||||||| || ||||| || || || ||||| || || || | ||||||||||| || |||||| |
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| T |
41092965 |
ggaagctgagaagaatgcaccttccatcatctttattgatgagatagattccatagctcctaagcgagagaaaactcacggtgaagtagagaggaggatt |
41092866 |
T |
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| Q |
256 |
gtttcacaacttctgactcttatggatgggctaaaatcccgtgctcatgttattgtcatgggggccactaatcgccccaatagcattgacccggcattga |
355 |
Q |
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|| || ||||| |||| ||||||||||| || ||||| ||||| ||||| ||||| ||||| ||||| ||| | ||||||||||||||||| ||| | | |
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| T |
41092865 |
gtctcccaactcttgacccttatggatggtcttaaatcacgtgcacatgtaattgttatgggagccacaaataggcccaatagcattgaccctgcactta |
41092766 |
T |
|
| Q |
356 |
gaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgacttgaagtccttcgcatacataccaaaaacatgaagctctc |
455 |
Q |
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| T |
41092765 |
ggaggtttggaaggtttgatagggagattgatattggtgttccagacgaggttgggcgtcttgaggttcttcgaattcatacaaagaatatgaaactcgc |
41092666 |
T |
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| Q |
456 |
tgatgatgtaa |
466 |
Q |
| |
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|| ||||||| |
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| T |
41092665 |
cgaagatgtaa |
41092655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 34 - 452
Target Start/End: Original strand, 27977217 - 27977635
Alignment:
| Q |
34 |
aagacattaatagcaagagctattgctaatgaaactggagctttcttcttttgtattaatggaccagagattatgtccaaaatggctggagagagtgaaa |
133 |
Q |
| |
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||||| ||||| ||| ||||| |||| ||||||||||| |||||||| || ||||| ||||| || ||||| ||||| || ||||||| |||||||||| |
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| T |
27977217 |
aagactttaattgcacgagctgttgcaaatgaaactggtgctttctttttctgtatcaatggtcctgagatcatgtcaaagctggctggtgagagtgaaa |
27977316 |
T |
|
| Q |
134 |
gcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatctttattgatgaaattgattctattgcacccaagcgggacaagacaaa |
233 |
Q |
| |
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| ||||| ||||| ||||| |||||||| || ||||||||||| || |||||||| |||||||| || || || ||||| || ||| |||| ||||| || |
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| T |
27977317 |
gtaatctgaggaaggcattcgaagaagctgagaagaatgcaccctcaatcatcttcattgatgagatagactccattgctccaaagagggagaagactaa |
27977416 |
T |
|
| Q |
234 |
tggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatcccgtgctcatgttattgtcatgggggccactaatcgcccc |
333 |
Q |
| |
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||||||||| || |||| |||||||| || || |||| || ||||||||||| ||||||||||| ||||| ||||| ||||| || || ||||| ||| |
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| T |
27977417 |
tggtgaagttgagcgaagaattgtttcccagctcttgaccctcatggatgggcttaaatcccgtgcacatgtaattgttatgggagcaacaaatcgtccc |
27977516 |
T |
|
| Q |
334 |
aatagcattgacccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgacttgaagtccttcgcatac |
433 |
Q |
| |
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|||||||| ||||| || | | |||||||| || |||||| |||| || ||||||||||| ||||||||| |||| || ||||| || || ||||| | |
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| T |
27977517 |
aatagcatcgaccctgctcttcggaggtttggaaggtttgatcgggagattgatattggtgtaccagatgaagttggacgtcttgaggttctccgcatcc |
27977616 |
T |
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| Q |
434 |
ataccaaaaacatgaagct |
452 |
Q |
| |
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|||| ||||| |||||||| |
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| T |
27977617 |
atacaaaaaatatgaagct |
27977635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 15690253 - 15690360
Alignment:
| Q |
173 |
caccatccatcatctttattgatgaaattgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgac |
272 |
Q |
| |
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|||||| |||| |||||||||||||| ||||||||| || |||||| | || |||||| || |||||| || |||||||||||||||||| | ||| |
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| T |
15690253 |
caccattcatcttctttattgatgaatttgattctactgtacccaa--gagagaagacacgtgatgaagttgatagaaggattgtttcacaagtcttgaa |
15690350 |
T |
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| Q |
273 |
tcttatggat |
282 |
Q |
| |
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|||||||||| |
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| T |
15690351 |
tcttatggat |
15690360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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