View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_11 (Length: 448)
Name: NF1490_low_11
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 23 - 432
Target Start/End: Complemental strand, 23099242 - 23098840
Alignment:
| Q |
23 |
attcagtgttggaatgttgggttttcaccttcaatatagagaggtgagaaaaaggggaaaggtagtggcgtcctttgccaccgttgaaaagaagcggtgt |
122 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
23099242 |
attcggtgttggaatgttgggttttcactttcaagatagagaggtgagaaaaaggggaaaggtagtggtgtcctttgccaccgttaaaaagaagcggtgt |
23099143 |
T |
|
| Q |
123 |
ggtgcattggccacggagaagtcattgtgagcacaacaagttatcacataggtgacggtgttaccatgacgacggtagggatttcttcaannnnnnncct |
222 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||||| ||| |
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| T |
23099142 |
ggtggattggccacggagaagtcattgtgagcacaacaagttattacataggtgacgatgccaccatgacgacggtaaggatttcttcaatttttttcct |
23099043 |
T |
|
| Q |
223 |
ttcttctattcttgttattcacttttttatatgctcatttctcccatttgttgatttttgttacaacctgttattcttcataaaaaagaaatcctttaat |
322 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| | || |
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| T |
23099042 |
ttcttctattcttcttattcacttttttatatgctcagt-------tttgttgatttttgttacaacctgttattcttcatcaaaaagaaatcctctcat |
23098950 |
T |
|
| Q |
323 |
accaattttgtttgtcacctatttcttctaagtcagtttcttatttctataattcttatggttattgttctcatgtttatcttttcacaatttacgaaat |
422 |
Q |
| |
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|||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
23098949 |
accaattttgtttgtcacttaaatcttctaagtcagtttcttatttctatgattcttatgattattgttctcatgtttatcttttcacaatttttgaaat |
23098850 |
T |
|
| Q |
423 |
aagattaaag |
432 |
Q |
| |
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|||||||||| |
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|
| T |
23098849 |
aagattaaag |
23098840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 23 - 252
Target Start/End: Original strand, 8846543 - 8846772
Alignment:
| Q |
23 |
attcagtgttggaatgttgggttttcaccttcaatatagagaggtgagaaaaaggggaaaggtagtggcgtcctttgccaccgttgaaaagaagcggtgt |
122 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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|
| T |
8846543 |
attcggtgttggaatgttgggttttcactttcaagatagagaggtgagaaaaaggggaaaggtagtggtgtcctttaccaccgttgaaaagaagcggtgt |
8846642 |
T |
|
| Q |
123 |
ggtgcattggccacggagaagtcattgtgagcacaacaagttatcacataggtgacggtgttaccatgacgacggtagggatttcttcaannnnnnncct |
222 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||| |
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| T |
8846643 |
ggtggattggccacggagaagtcatcgtgagcacaacaagttatcacataggtgacgatgccaccatgacgacggtagggatttcttcaatttttttcct |
8846742 |
T |
|
| Q |
223 |
ttcttctattcttgttattcacttttttat |
252 |
Q |
| |
|
||||||||||||| |||||||||||||||| |
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|
| T |
8846743 |
ttcttctattcttcttattcacttttttat |
8846772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 8225703 - 8225297
Alignment:
| Q |
17 |
gcacagattcagtgttggaatgttgggttttcaccttcaatatagagaggtgagaaaaaggggaaaggtagtggcgtcctttgccaccgttgaaaagaag |
116 |
Q |
| |
|
||||| |||| |||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
8225703 |
gcacatattcggtgttggaatgttgtgttttcactttcaagatagagaggtgagaaaaaggggaaaggtagtggtgtcctttgccaccgttgaaaagaag |
8225604 |
T |
|
| Q |
117 |
cggtgtggtgcattggccacggagaagtcattgtgagcacaacaagttatcacataggtgacggtgttaccatgacgacggtagggatttcttcaannnn |
216 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |
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|
| T |
8225603 |
cggtgtggtggattggccacggagaagtcattgtgagcacaacaagttatcacataggtgacgatgccaccatgacgacagtagggatttcttcaatttt |
8225504 |
T |
|
| Q |
217 |
nnncctttcttctattcttgttattcacttttttatatgctcatttctcccatttgttgatttttgttacaacctgttattcttcataaaaaagaaatcc |
316 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || |
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|
| T |
8225503 |
tttcctttcttctattcttcttattcacttttttatatgctcatt-------tttgttgatttttgttacaacctgttattcttcatcaaaaagaaaacc |
8225411 |
T |
|
| Q |
317 |
tttaataccaattttgtttgtcacctatttcttctaagtcagtttcttatttctataattcttatggttattgttctcatgtttatcttttcacaattta |
416 |
Q |
| |
|
| | |||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||| |
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|
| T |
8225410 |
tctcataccaattttgtt--tcacttatttcttctaagtcagtttcttatttctatgattcttatgattattgttatcatgtttatcttttcacaattta |
8225313 |
T |
|
| Q |
417 |
cgaaataagattaaag |
432 |
Q |
| |
|
||||||||| ||||| |
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|
| T |
8225312 |
tgaaataagaataaag |
8225297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 432
Target Start/End: Original strand, 42881173 - 42881578
Alignment:
| Q |
17 |
gcacagattcagtgttggaatgttgggttttcaccttcaatatagagaggtgagaaaaaggggaaaggtagtggcgtcctttgccaccgttgaaaagaag |
116 |
Q |
| |
|
||||| |||| |||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
42881173 |
gcacatattcggtgttggaatgttgtgttttcactttcaagatagagaggtgagaaaaaggggaaaggtagtggtgtcctttgccaccgttgaaaagaag |
42881272 |
T |
|
| Q |
117 |
cggtgtggtgcattggccacggagaagtcattgtgagcacaacaagttatcacataggtgacggtgttaccatgacgacggtagggatttcttcaannnn |
216 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |
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|
| T |
42881273 |
cggtgtcgtggattggccacggagaagtcattgtgagcacaacaagttatcacataggtgacgatgccaccatgacgacagtagggatttcttcaa-ttt |
42881371 |
T |
|
| Q |
217 |
nnncctttcttctattcttgttattcacttttttatatgctcatttctcccatttgttgatttttgttacaacctgttattcttcataaaaaagaaatcc |
316 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || |
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|
| T |
42881372 |
tttcctttcttctattcttcttattcacttttttatatgctcatt-------tttgttgatttttgttacaacctgttattcttcatcaaaaagaaaacc |
42881464 |
T |
|
| Q |
317 |
tttaataccaattttgtttgtcacctatttcttctaagtcagtttcttatttctataattcttatggttattgttctcatgtttatcttttcacaattta |
416 |
Q |
| |
|
| | |||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||| |
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|
| T |
42881465 |
tctcataccaattttgtt--tcacttatttcttctaagtcagtttcttatttctatgattcttatgattattgttatcatgtttatcttttcacaattta |
42881562 |
T |
|
| Q |
417 |
cgaaataagattaaag |
432 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
42881563 |
tgaaataagaataaag |
42881578 |
T |
|
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