View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_13 (Length: 423)
Name: NF1490_low_13
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_13 |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Original strand, 26652903 - 26653306
Alignment:
| Q |
17 |
agaaaagtataaagaggtttaaagtacaaagtataaaagaaaaatatacactaaatctaattaatatacaaacttttaacaacaaaaaattaccttacaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
26652903 |
agaaaagtataaagaggtttaaagtacaaagtataaaagaaaaatatacactaaatctaattaatatacaaacttttatcaacaaa---ttaccttacaa |
26652999 |
T |
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| Q |
117 |
tcaattaacacaaatccatgggaacggcgccatttgatgagcccgattgtagcaatgaagaatcaaagatttataattattagttggtagtgtttagctg |
216 |
Q |
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| T |
26653000 |
tcaattaacacaaatccatgggaacagcgccatttgatgagcccgattgtagcaatgaagaatcaaagatttataattattagttggtagtgtttagctg |
26653099 |
T |
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| Q |
217 |
attataggtgttcattgagaaattatgagtgaaggatgaaacaaacaatagacaagttatgttgggaataggcttcattagttagttcatctttccttga |
316 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26653100 |
attataggtgtttattgagaaattatgagtgaaggatgaaacaaacaatagacaagttatgttgggaatagacttcattagttagttcatctttccttga |
26653199 |
T |
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| Q |
317 |
tcaactttaagttccttttatctcaattatacattcatctatcacccttcatggatcttgatgtctcgtaaataatggaagatagtctctattctctaac |
416 |
Q |
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| T |
26653200 |
tcaactttaaattccttttattccaattataccttcacctatcacccttcatggatcttgatatctcgtaaataatggtagatcgtctctagtctctaac |
26653299 |
T |
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| Q |
417 |
ctctgat |
423 |
Q |
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| T |
26653300 |
ctctgat |
26653306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 197 - 416
Target Start/End: Complemental strand, 31930881 - 31930656
Alignment:
| Q |
197 |
tagttggtagtgtttagctgattataggtgttcattgagaaattatgagtgaaggatgaaacaaacaatagacaagttatgttgggaataggcttcatta |
296 |
Q |
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| T |
31930881 |
tagttggtagtgtttagttgattgtaggtgtttattgacacattatgagtgaggggtgaaacaaacaatagaaaagttgtgttgggattaagcttcacta |
31930782 |
T |
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| Q |
297 |
gttagttca------tctttccttgatcaactttaagttccttttatctcaattatacattcatctatcacccttcatggatcttgatgtctcgtaaata |
390 |
Q |
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| T |
31930781 |
gtcagttcaataatgtcttttcctgatcgattataaactcctcttatttcaattataccttcacttatcaccttaaatagatctcgatgtctcatagata |
31930682 |
T |
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| Q |
391 |
atggaagatagtctctattctctaac |
416 |
Q |
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| T |
31930681 |
atgagagatcgtctctagtctctaac |
31930656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 423
Target Start/End: Complemental strand, 26744607 - 26744381
Alignment:
| Q |
201 |
tggtagtgtttagctgattataggtgttcattgagaaattatgagtgaaggatgaaacaaacaatagacaagttatgttgggaataggcttcattagtta |
300 |
Q |
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| T |
26744607 |
tggtagtgtttggttgattgtaggtgtttattgatataatatgagtg--gggtgaaacaaacaatttacaatttgtgttaggattaagcttcattagtta |
26744510 |
T |
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| Q |
301 |
gttca------tctttccttgatcaactttaagttccttttatctcaattatacattcatctatcacccttcatggatcttgatgtctcgtaaataatgg |
394 |
Q |
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| T |
26744509 |
gtttactaatgtctttctttaatggactaaaaactcttattatcccaattatatcttcacctatcacccttcatagatctcgatgtctcacaaataatgg |
26744410 |
T |
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| Q |
395 |
aagatagtctctattctctaacctctgat |
423 |
Q |
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| T |
26744409 |
gagataatctctagtatctaacctttgat |
26744381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 27751046 - 27751095
Alignment:
| Q |
329 |
tccttttatctcaattatacattcatctatcacccttcatggatcttgat |
378 |
Q |
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| T |
27751046 |
tcctcttatttcaattatacattcacctatcgcccttcatagatcttgat |
27751095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 18435520 - 18435572
Alignment:
| Q |
253 |
tgaaacaaacaatagacaagttatgttgggaataggcttcattagttagttca |
305 |
Q |
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| T |
18435520 |
tgaaataaacaacagacaagttgtgttgggattaagcttcattagttagttca |
18435572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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