View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_14 (Length: 414)
Name: NF1490_low_14
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 77 - 396
Target Start/End: Complemental strand, 27449034 - 27448715
Alignment:
| Q |
77 |
tagaacaattgtgtaatttgaacaataactttttcgacaacaaatctaagttgttgactgatataccaactgcaaatcccgttaagcatcaatgctactt |
176 |
Q |
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| T |
27449034 |
tagaacaattgtgtaatttgaacaataactttttcgacaacaaatctaagtggttgatggatataccaactgcaaatcacattaagcatcaatgctactt |
27448935 |
T |
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| Q |
177 |
gtttaactatgagtatcatgtttggtatctgtgtcagcgtttcatagatacaaatgcatgaattaaaagtgaatgtgaataagaatctcacttcatttag |
276 |
Q |
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| T |
27448934 |
gtttaactatgagtatcatgtttggtatctgtgtcagcgtttcatagatacaaatgcatgaattaaaagtgaatgtgaataagaatctcacttcatttag |
27448835 |
T |
|
| Q |
277 |
tatattttcagcaaggcgttcaactctcacgagtctagcaacctgaggagtaaaactcctgtgccattcagtatcaagtattttgtccaaatgtatccca |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27448834 |
gatattttcagcaaggcgttcaactctcacgagtctagcgacatgaggagtaaaactcctgtgccattcagtatcaagtattttgtccaaatgtatccca |
27448735 |
T |
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| Q |
377 |
tcatcgaagattactgtaga |
396 |
Q |
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||||||||||| |||||||| |
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| T |
27448734 |
tcatcgaagatcactgtaga |
27448715 |
T |
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