View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1490_low_18 (Length: 356)

Name: NF1490_low_18
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1490_low_18
NF1490_low_18
[»] chr4 (8 HSPs)
chr4 (31-339)||(40946431-40946743)
chr4 (49-94)||(55969999-55970044)
chr4 (43-91)||(37247409-37247457)
chr4 (44-86)||(6077772-6077814)
chr4 (35-73)||(35118821-35118859)
chr4 (42-91)||(1586316-1586365)
chr4 (42-71)||(6078129-6078158)
chr4 (42-70)||(5834051-5834079)
[»] chr1 (8 HSPs)
chr1 (34-91)||(31206533-31206590)
chr1 (40-91)||(7789585-7789636)
chr1 (43-86)||(42400867-42400910)
chr1 (43-91)||(33259656-33259704)
chr1 (43-91)||(33279815-33279863)
chr1 (43-82)||(37583263-37583302)
chr1 (42-71)||(23739951-23739980)
chr1 (42-86)||(7712440-7712484)
[»] chr8 (5 HSPs)
chr8 (32-91)||(44103990-44104049)
chr8 (34-73)||(18806859-18806898)
chr8 (42-85)||(7176895-7176938)
chr8 (44-86)||(6106971-6107013)
chr8 (44-86)||(8644275-8644317)
[»] chr5 (10 HSPs)
chr5 (43-91)||(8433952-8434000)
chr5 (34-73)||(40976273-40976312)
chr5 (44-94)||(13542424-13542474)
chr5 (44-88)||(32273830-32273874)
chr5 (44-91)||(9784806-9784853)
chr5 (44-91)||(15635810-15635857)
chr5 (44-86)||(14089972-14090014)
chr5 (44-86)||(19495218-19495260)
chr5 (43-91)||(2552283-2552331)
chr5 (43-91)||(33494949-33494997)
[»] chr3 (6 HSPs)
chr3 (42-86)||(7885816-7885860)
chr3 (39-86)||(376960-377007)
chr3 (44-91)||(31153597-31153644)
chr3 (48-86)||(45707497-45707535)
chr3 (44-86)||(49615612-49615654)
chr3 (44-84)||(7932567-7932607)
[»] chr2 (10 HSPs)
chr2 (34-91)||(11512133-11512190)
chr2 (31-91)||(43301811-43301871)
chr2 (42-85)||(18379707-18379750)
chr2 (44-86)||(449269-449311)
chr2 (44-86)||(5552570-5552612)
chr2 (44-86)||(9707487-9707529)
chr2 (43-89)||(27974611-27974657)
chr2 (43-89)||(28061140-28061186)
chr2 (31-88)||(11915743-11915800)
chr2 (45-86)||(16118119-16118160)
[»] chr6 (2 HSPs)
chr6 (43-91)||(11703374-11703422)
chr6 (42-86)||(31632539-31632583)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 31 - 339
Target Start/End: Original strand, 40946431 - 40946743
Alignment:
Q  31 tttcacattgaaggtacctattaggtaccgggtcttaaatggtgaggacctcaccaatgtgaatattattatccgcaaataattccccctcacacaaggg 130  Q
    |||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||| ||||  | ||||||  ||||||| ||||||||||||||||    
T  40946431 tttcacattggagatacctattaggtaccggatcttaaatggtgaagacctcaccaatgggaatgctcttatccataaataatcccccctcacacaaggg 40946530  T
Q  131 aactgaatcccacaacttgttcttgactatatgatactccgtacaaggtttccaagcccccaatacatctaggttggataaatttattccagctcgcgca 230  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40946531 aactgaatcccacaacttgttcttgactatatgatactccatacaaggtttccaagcccccaatacatctaggttggataattttattccagctcgcgca 40946630  T
Q  231 tg----ttcttttatccttcccaccacaccaaatgaaacctctcacaagcatattgaggaaaccaccttatttgcatgctacaagagggtaaagcagtaa 326  Q
    ||    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40946631 tgtgcatacttttatccttcccaccacaccaaatgaaacctctcacaagcatattgaggaaaccaccttatttgcatgctacaagagggtaaagcagtaa 40946730  T
Q  327 aaataacattatc 339  Q
    |||||||||||||    
T  40946731 aaataacattatc 40946743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 55970044 - 55969999
Alignment:
Q  49 tattaggtaccgggtcttaaatggtgaggacctcaccaatgtgaat 94  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  55970044 tattaggtaccaggtcttaaatggtgaagacctcaccaatgtgaat 55969999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 37247409 - 37247457
Alignment:
Q  43 ggtacctattaggtaccgggtcttaaatggtgaggacctcaccaatgtg 91  Q
    ||||||||||||||||| | ||||||||||||| |||||||||| ||||    
T  37247409 ggtacctattaggtaccagatcttaaatggtgaagacctcaccattgtg 37247457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 6077772 - 6077814
Alignment:
Q  44 gtacctattaggtaccgggtcttaaatggtgaggacctcacca 86  Q
    |||||||||||||||  ||||||||||||||| ||||||||||    
T  6077772 gtacctattaggtactaggtcttaaatggtgaagacctcacca 6077814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 35118821 - 35118859
Alignment:
Q  35 acattgaaggtacctattaggtaccgggtcttaaatggt 73  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  35118821 acattgagggtacctattaggtaccggatcttaaatggt 35118859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 1586365 - 1586316
Alignment:
Q  42 aggtacctattaggtaccgggtcttaaatggtgaggacctcaccaatgtg 91  Q
    ||||||||| |||||||||| ||||||||||| | |||||||||| ||||    
T  1586365 aggtacctaataggtaccggatcttaaatggttaagacctcaccattgtg 1586316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 71
Target Start/End: Original strand, 6078129 - 6078158
Alignment:
Q  42 aggtacctattaggtaccgggtcttaaatg 71  Q
    ||||||||||||||||||||||||||||||    
T  6078129 aggtacctattaggtaccgggtcttaaatg 6078158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 5834079 - 5834051
Alignment:
Q  42 aggtacctattaggtaccgggtcttaaat 70  Q
    |||||||||||||||||||||||||||||    
T  5834079 aggtacctattaggtaccgggtcttaaat 5834051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 31206533 - 31206590
Alignment:
Q  34 cacattgaaggtacctattaggtaccgggtcttaaatggtgaggacctcaccaatgtg 91  Q
    |||||||||||||||||||||||| | |||||||||||| || |||||||||||||||    
T  31206533 cacattgaaggtacctattaggtaacaggtcttaaatggggaagacctcaccaatgtg 31206590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 7789636 - 7789585
Alignment:
Q  40 gaaggtacctattaggtaccgggtcttaaatggtgaggacctcaccaatgtg 91  Q
    ||||||||||||||||||| |||||||||||||| | ||||| |||||||||    
T  7789636 gaaggtacctattaggtactgggtcttaaatggtaaagaccttaccaatgtg 7789585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 42400910 - 42400867
Alignment:
Q  43 ggtacctattaggtaccgggtcttaaatggtgaggacctcacca 86  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||    
T  42400910 ggtacctattaggtaccgggtcttaaatgatgaagacctcacca 42400867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 33259656 - 33259704
Alignment:
Q  43 ggtacctattaggtaccgggtcttaaatggtgaggacctcaccaatgtg 91  Q
    |||||||||| |||| ||||||||||||||||| |||||||||| ||||    
T  33259656 ggtacctatttggtatcgggtcttaaatggtgaagacctcaccattgtg 33259704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 33279815 - 33279863
Alignment:
Q  43 ggtacctattaggtaccgggtcttaaatggtgaggacctcaccaatgtg 91  Q
    |||||||||| |||| ||||||||||||||||| |||||||||| ||||    
T  33279815 ggtacctatttggtatcgggtcttaaatggtgaagacctcaccattgtg 33279863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 37583263 - 37583302
Alignment:
Q  43 ggtacctattaggtaccgggtcttaaatggtgaggacctc 82  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  37583263 ggtacctattaggtaccgggtcttaaatggttaagacctc 37583302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 71
Target Start/End: Complemental strand, 23739980 - 23739951
Alignment:
Q  42 aggtacctattaggtaccgggtcttaaatg 71  Q
    ||||||||||||||||||||||||||||||    
T  23739980 aggtacctattaggtaccgggtcttaaatg 23739951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 7712440 - 7712484
Alignment:
Q  42 aggtacctattaggtaccgggtcttaaatggtgaggacctcacca 86  Q
    ||||||||||||| |||| ||| ||||||||||| ||||||||||    
T  7712440 aggtacctattagataccaggttttaaatggtgatgacctcacca 7712484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 44104049 - 44103990
Alignment:
Q  32 ttcacattgaaggtacctattaggtaccgggtcttaaatggtgaggacctcaccaatgtg 91  Q
    |||||||||  |||||||||||||||||  |||||||||||||| |||||||||||||||    
T  44104049 ttcacattgggggtacctattaggtaccaagtcttaaatggtgaagacctcaccaatgtg 44103990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 18806898 - 18806859
Alignment:
Q  34 cacattgaaggtacctattaggtaccgggtcttaaatggt 73  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  18806898 cacattggaggtacctattaggtaccgggtcttaaatggt 18806859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 7176895 - 7176938
Alignment:
Q  42 aggtacctattaggtaccgggtcttaaatggtgaggacctcacc 85  Q
    ||||||||||||| |||| ||||||||||||||| |||||||||    
T  7176895 aggtacctattagctaccaggtcttaaatggtgaagacctcacc 7176938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 6107013 - 6106971
Alignment:
Q  44 gtacctattaggtaccgggtcttaaatggtgaggacctcacca 86  Q
    |||||||||||||||  ||||||||||||||| ||||||||||    
T  6107013 gtacctattaggtactaggtcttaaatggtgaagacctcacca 6106971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 8644317 - 8644275
Alignment:
Q  44 gtacctattaggtaccgggtcttaaatggtgaggacctcacca 86  Q
    |||||||||||||||  ||||||||||||||| ||||||||||    
T  8644317 gtacctattaggtactaggtcttaaatggtgaagacctcacca 8644275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 8433952 - 8434000
Alignment:
Q  43 ggtacctattaggtaccgggtcttaaatggtgaggacctcaccaatgtg 91  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| ||||    
T  8433952 ggtacctattaggtaccaggtcttaaatggtgaagacctcaccattgtg 8434000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 40976312 - 40976273
Alignment:
Q  34 cacattgaaggtacctattaggtaccgggtcttaaatggt 73  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  40976312 cacattgaaggtacctattagataccgggtcttaaatggt 40976273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 13542424 - 13542474
Alignment:
Q  44 gtacctattaggtaccgggtcttaaatggtgaggacctcaccaatgtgaat 94  Q
    |||||||||||||||  ||||||||||||||| |||||||||| |||||||    
T  13542424 gtacctattaggtactaggtcttaaatggtgaagacctcaccattgtgaat 13542474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 32273830 - 32273874
Alignment:
Q  44 gtacctattaggtaccgggtcttaaatggtgaggacctcaccaat 88  Q
    |||||||||||||||  ||||||||||||||| ||||||||||||    
T  32273830 gtacctattaggtactaggtcttaaatggtgaagacctcaccaat 32273874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 9784806 - 9784853
Alignment:
Q  44 gtacctattaggtaccgggtcttaaatggtgaggacctcaccaatgtg 91  Q
    |||||||||||||||  ||||||||||||||| |||||||||| ||||    
T  9784806 gtacctattaggtactaggtcttaaatggtgaagacctcaccattgtg 9784853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 15635810 - 15635857
Alignment:
Q  44 gtacctattaggtaccgggtcttaaatggtgaggacctcaccaatgtg 91  Q
    |||||||||||||||  ||||||||||||||| |||||||||| ||||    
T  15635810 gtacctattaggtactaggtcttaaatggtgaagacctcaccattgtg 15635857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 14089972 - 14090014
Alignment:
Q  44 gtacctattaggtaccgggtcttaaatggtgaggacctcacca 86  Q
    |||||||||||||||  ||||||||||||||| ||||||||||    
T  14089972 gtacctattaggtactaggtcttaaatggtgaagacctcacca 14090014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 19495218 - 19495260
Alignment:
Q  44 gtacctattaggtaccgggtcttaaatggtgaggacctcacca 86  Q
    |||||||||||||||  ||||||||||||||| ||||||||||    
T  19495218 gtacctattaggtactaggtcttaaatggtgaagacctcacca 19495260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 2552331 - 2552283
Alignment:
Q  43 ggtacctattaggtaccgggtcttaaatggtgaggacctcaccaatgtg 91  Q
    ||||| ||||||||| |  |||||||||||||| |||||||||||||||    
T  2552331 ggtacatattaggtatcaagtcttaaatggtgaagacctcaccaatgtg 2552283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 33494949 - 33494997
Alignment:
Q  43 ggtacctattaggtaccgggtcttaaatggtgaggacctcaccaatgtg 91  Q
    |||||||| |||||| ||||||||||||||| | |||||||||| ||||    
T  33494949 ggtacctaataggtatcgggtcttaaatggttaagacctcaccattgtg 33494997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 7885860 - 7885816
Alignment:
Q  42 aggtacctattaggtaccgggtcttaaatggtgaggacctcacca 86  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||    
T  7885860 aggtacctattaggtatcgggtcttaaatggtgaagacctcacca 7885816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 377007 - 376960
Alignment:
Q  39 tgaaggtacctattaggtaccgggtcttaaatggtgaggacctcacca 86  Q
    |||||||||||||||| |||  ||||||||||||||| ||||||||||    
T  377007 tgaaggtacctattagatactaggtcttaaatggtgaagacctcacca 376960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 31153597 - 31153644
Alignment:
Q  44 gtacctattaggtaccgggtcttaaatggtgaggacctcaccaatgtg 91  Q
    |||||||||||||||  ||||||||||||||| |||||||||| ||||    
T  31153597 gtacctattaggtactaggtcttaaatggtgaagacctcaccattgtg 31153644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 45707535 - 45707497
Alignment:
Q  48 ctattaggtaccgggtcttaaatggtgaggacctcacca 86  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  45707535 ctattaggtaccggatcttaaatggtgaagacctcacca 45707497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 49615654 - 49615612
Alignment:
Q  44 gtacctattaggtaccgggtcttaaatggtgaggacctcacca 86  Q
    |||||||||||||||  ||||||||||||||| ||||||||||    
T  49615654 gtacctattaggtactaggtcttaaatggtgaagacctcacca 49615612  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 7932567 - 7932607
Alignment:
Q  44 gtacctattaggtaccgggtcttaaatggtgaggacctcac 84  Q
    |||||||||||||||  ||||||||||||||| ||||||||    
T  7932567 gtacctattaggtactaggtcttaaatggtgaagacctcac 7932607  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 11512133 - 11512190
Alignment:
Q  34 cacattgaaggtacctattaggtaccgggtcttaaatggtgaggacctcaccaatgtg 91  Q
    |||||||  ||||||||||||||||||||||||||||||| | ||||  |||||||||    
T  11512133 cacattgggggtacctattaggtaccgggtcttaaatggtaaagaccctaccaatgtg 11512190  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 43301871 - 43301811
Alignment:
Q  31 tttcacattgaaggtacctattaggtaccgggtcttaaatggtgaggacctcaccaatgtg 91  Q
    ||||||||||  |||||||||||||||   ||||||||||| ||| |||||||||||||||    
T  43301871 tttcacattgggggtacctattaggtataaggtcttaaatgatgaagacctcaccaatgtg 43301811  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 18379750 - 18379707
Alignment:
Q  42 aggtacctattaggtaccgggtcttaaatggtgaggacctcacc 85  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||    
T  18379750 aggtacctattaggtaccgggttttaaatggtgaagacttcacc 18379707  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 449269 - 449311
Alignment:
Q  44 gtacctattaggtaccgggtcttaaatggtgaggacctcacca 86  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||    
T  449269 gtacctattaggtaccaggtcttaaatggtgaagaccttacca 449311  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 5552570 - 5552612
Alignment:
Q  44 gtacctattaggtaccgggtcttaaatggtgaggacctcacca 86  Q
    |||||||||||||||  ||||||||||||||| ||||||||||    
T  5552570 gtacctattaggtactaggtcttaaatggtgaagacctcacca 5552612  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 9707487 - 9707529
Alignment:
Q  44 gtacctattaggtaccgggtcttaaatggtgaggacctcacca 86  Q
    |||||||||||||||  ||||||||||||||| ||||||||||    
T  9707487 gtacctattaggtactaggtcttaaatggtgaagacctcacca 9707529  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 27974611 - 27974657
Alignment:
Q  43 ggtacctattaggtaccgggtcttaaatggtgaggacctcaccaatg 89  Q
    ||||||| ||||||| ||||||||||| ||||| |||||||||||||    
T  27974611 ggtacctgttaggtaacgggtcttaaacggtgaagacctcaccaatg 27974657  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 28061140 - 28061186
Alignment:
Q  43 ggtacctattaggtaccgggtcttaaatggtgaggacctcaccaatg 89  Q
    ||||||| ||||||| ||||||||||| ||||| |||||||||||||    
T  28061140 ggtacctgttaggtaacgggtcttaaacggtgaagacctcaccaatg 28061186  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 11915800 - 11915743
Alignment:
Q  31 tttcacattgaaggtacctattaggtaccgggtcttaaatggtgaggacctcaccaat 88  Q
    |||||||||| || ||||||||| ||| | ||| ||||||||||| ||||||||||||    
T  11915800 tttcacattggagatacctattaagtatcaggttttaaatggtgaagacctcaccaat 11915743  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 16118119 - 16118160
Alignment:
Q  45 tacctattaggtaccgggtcttaaatggtgaggacctcacca 86  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||    
T  16118119 tacctattatgtaccggatcttaaatggtgaagacctcacca 16118160  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 11703374 - 11703422
Alignment:
Q  43 ggtacctattaggtaccgggtcttaaatggtgaggacctcaccaatgtg 91  Q
    |||||||| |||||||||||||||| ||||| | |||||||||| ||||    
T  11703374 ggtacctaataggtaccgggtcttacatggttaagacctcaccattgtg 11703422  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 31632539 - 31632583
Alignment:
Q  42 aggtacctattaggtaccgggtcttaaatggtgaggacctcacca 86  Q
    |||||||||||| |||| |||||||||||| ||| ||||||||||    
T  31632539 aggtacctattaagtactgggtcttaaatgatgaagacctcacca 31632583  T

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