View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_24 (Length: 319)
Name: NF1490_low_24
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 2 - 300
Target Start/End: Original strand, 24619660 - 24619958
Alignment:
| Q |
2 |
aagtgtgagtcactcacgtatcctagttgatatgagacttaacactcacacttgaacttcaacaatctttgacacaagtgtgagtcacccacatcaccaa |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
24619660 |
aagtgtgagtcactcacgtatcctagttgatatgagacttaacactcacacttgaacttcaacaatctttggcacaagtgtgagtcacccacatcactaa |
24619759 |
T |
|
| Q |
102 |
cttgatccacactatgatcctggccccactctcccaccgagcctaaacatccatgatcattaaaaaactttaagatattaagtatgtgtgtcgcctctca |
201 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||| | || ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
24619760 |
cttgatccacactatgatcctggctccactcttccaccgatcttagacatccatgatcattaaaagactttaaggtattaagtatgtgtgtcgcctctca |
24619859 |
T |
|
| Q |
202 |
acatatcctcattcctaatcaatatgagacttagccaccaaacttaaattccaactgtcattacaagaaaagnnnnnnntggctagtttccatcaccta |
300 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24619860 |
acatgtcctcattcctaatcaatatgagacttaaccaccaaacttaaattccaactgtcattacaagaaaagaaaaaaatggctagtttccatcaccta |
24619958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 2954371 - 2954474
Alignment:
| Q |
44 |
cactcacacttgaacttcaacaatctttgacacaagtgtgagtcacccacatcaccaacttgatccacactatgatcctggccccactctcccaccgagc |
143 |
Q |
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|||||||||||||| |||||||||| | ||||||||||||||||||||||| | |||||||||||||| |||| || ||||||| |||||||||| |
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| T |
2954371 |
cactcacacttgaaactcaacaatctccccctcaagtgtgagtcacccacatcactagcttgatccacactaggatcttgctcccactcccccaccgagc |
2954470 |
T |
|
| Q |
144 |
ctaa |
147 |
Q |
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|||| |
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| T |
2954471 |
ctaa |
2954474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 5981621 - 5981691
Alignment:
| Q |
76 |
caagtgtgagtcacccacatcaccaacttgatccacactatgatcctggccccactctcccaccgagcctaa |
147 |
Q |
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|||| |||||||||||||||||| | | |||||||||||| ||||| | ||||||| |||||||||||||| |
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| T |
5981621 |
caagcgtgagtcacccacatcactagcctgatccacactaggatcccgctcccactc-cccaccgagcctaa |
5981691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 40195999 - 40196044
Alignment:
| Q |
76 |
caagtgtgagtcacccacatcaccaacttgatccacactatgatcc |
121 |
Q |
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||||||||||||||||||||||| | | |||||||||||| ||||| |
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| T |
40195999 |
caagtgtgagtcacccacatcactagcctgatccacactaggatcc |
40196044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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