View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1490_low_27 (Length: 310)
Name: NF1490_low_27
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 27448665 - 27448389
Alignment:
| Q |
17 |
attcttctgtattcttcaacagcttccaaagttggctcgcatccatacaacgcagcaacatctcttagatttctctgccatcacaaaaataaccaatcga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27448665 |
attcttctgtattcttcaacagcttccaaagttggctcgcatccatacaactcagcaacatctcttagatttctctgccatcacaaaaataaccaatcaa |
27448566 |
T |
|
| Q |
117 |
ttatttttagatatttccttagaagtaaacaaagcatagaatgttttttaccttgaaggatagagagtattgtgttgaagcaacagcatcaccatgtgct |
216 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27448565 |
tt-tttttagatatttccttagaagtaaacaaagcatagaatgttttttaccttgaaggatagagagtattgtgttgaagcaacagcatcaccatgcgct |
27448467 |
T |
|
| Q |
217 |
agagaaaaagcatgaatcaaagaaaagttggagtcaagcgcaactaagttatgggcatgaccatccacaagttccaca |
294 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27448466 |
aatgaaaaagcatgaatcaaagaaaagtttgagtcaaccgcaactaagttatgggcatgaccatccacaagttccaca |
27448389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 166 - 290
Target Start/End: Complemental strand, 27423254 - 27423130
Alignment:
| Q |
166 |
accttgaaggatagagagtattgtgttgaagcaacagcatcaccatgtgctagagaaaaagcatgaatcaaagaaaagttggagtcaagcgcaactaagt |
265 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| |||||||||||||||| |||||| | |||||| |||| |||||||| | ||| | ||||| || |
|
|
| T |
27423254 |
accttgaaggatagagagtgttgtgaagaagcaagagcatcaccatgtgcttcagaaaaggaatgaataaaaggcaagttggattgaagagaaactatgt |
27423155 |
T |
|
| Q |
266 |
tatgggcatgaccatccacaagttc |
290 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
27423154 |
tgtgggcatgaccatccacaagttc |
27423130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 166 - 290
Target Start/End: Complemental strand, 27401155 - 27401031
Alignment:
| Q |
166 |
accttgaaggatagagagtattgtgttgaagcaacagcatcaccatgtgctagagaaaaagcatgaatcaaagaaaagttggagtcaagcgcaactaagt |
265 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||| || ||| |||||| |||||||| || | |||||||| | ||| | ||||| || |
|
|
| T |
27401155 |
accttgaaggatagagagtgttgtgaagaagcaagagcatcaccttgagcttcagaaaaggcatgaataaagggcaagttggattgaagagaaactatgt |
27401056 |
T |
|
| Q |
266 |
tatgggcatgaccatccacaagttc |
290 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
27401055 |
tgtgggcatgaccatccacaagttc |
27401031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University