View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1490_low_30 (Length: 300)

Name: NF1490_low_30
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1490_low_30
NF1490_low_30
[»] chr3 (26 HSPs)
chr3 (1-286)||(6258861-6259152)
chr3 (28-286)||(13270662-13270923)
chr3 (1-282)||(6244956-6245240)
chr3 (1-286)||(6168550-6168844)
chr3 (47-284)||(7749663-7749909)
chr3 (47-284)||(6591475-6591721)
chr3 (1-284)||(6141947-6142239)
chr3 (53-284)||(6899749-6899989)
chr3 (47-264)||(6916782-6917008)
chr3 (1-171)||(6882287-6882457)
chr3 (1-176)||(6265469-6265644)
chr3 (46-171)||(8569094-8569219)
chr3 (46-173)||(7587628-7587755)
chr3 (46-173)||(8471317-8471444)
chr3 (46-171)||(6520311-6520436)
chr3 (53-159)||(6722222-6722328)
chr3 (40-173)||(6839047-6839180)
chr3 (67-170)||(8589485-8589588)
chr3 (70-171)||(6947024-6947125)
chr3 (194-274)||(6882175-6882255)
chr3 (193-280)||(6265356-6265443)
chr3 (77-173)||(6554618-6554714)
chr3 (77-173)||(6735743-6735839)
chr3 (47-171)||(8454409-8454533)
chr3 (112-171)||(6480197-6480256)
chr3 (47-168)||(6448937-6449058)
[»] chr1 (1 HSPs)
chr1 (1-286)||(35140445-35140742)
[»] chr7 (1 HSPs)
chr7 (40-173)||(6573438-6573571)
[»] chr4 (1 HSPs)
chr4 (53-173)||(25242289-25242409)
[»] scaffold0425 (1 HSPs)
scaffold0425 (97-173)||(7677-7753)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 6259152 - 6258861
Alignment:
Q  1 gatttgtggcgtttacccaagggtgagaacagca---tttattcggttttgagaatgagttaccttagcctcccttacaatctgaagcattgttttgctt 97  Q
    |||||||||||||||||||||||||| |||||||   ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6259152 gatttgtggcgtttacccaagggtgacaacagcaacatttattccgctttgagaatgagttaccttagcctcccttccaatctgaagcattgttttgctt 6259053  T
Q  98 attgttctatatttcccaagggttatgagtttgaaaaggatggattaatcaagctttggatggcacaaggtttgctaaagggaatagccatta---atga 194  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| |||  |   | ||    
T  6259052 attgttctatatttcccaagggttatgagtttgaaaagggtgaattaatcaagctttggatggcaaaaggtttgctaaagggaataaccaaaaaagaaga 6258953  T
Q  195 agagttgggtaataaattcttcaatgagctagtgtcaatgtcgtttttccaacaatcagcaattatgccattctgggctggtaagtactatt 286  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||    
T  6258952 agagttgggtaataaattcttcaatgatctagtgtcaatgtcttttttccaaccatcagcgattatgccattctgggctggtaagtactatt 6258861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 28 - 286
Target Start/End: Original strand, 13270662 - 13270923
Alignment:
Q  28 aacagcatttattcggttttgagaatgagttaccttagcctcccttacaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagt 127  Q
    |||||||||| |||  || |||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13270662 aacagcattttttccattctgagaatgagttaccttagcctaccttccaatctgaagcattgttttgcatattgttctatatttcccaagggttatgagt 13270761  T
Q  128 ttgaaaaggatggattaatcaagctttggatggcacaaggtttgctaaagggaatagccattaat---gaagagttgggtaataaattcttcaatgagct 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||   ||||||||||||||||||||||||||||| ||    
T  13270762 ttgaaaaggatggattaatcaagctttggatggcacaaggtttgctaaagggaatagccaaaaatgaagaagagttgggtaataaattcttcaatgatct 13270861  T
Q  225 agtgtcaatgtcgtttttccaacaatcagcaattatgccattctgggctggtaagtactatt 286  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13270862 agtgtcaatttcgtttttccaacaatcagcaattgtgccattctgggctggtaagtactatt 13270923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 6245240 - 6244956
Alignment:
Q  1 gatttgtggcgtttacccaagggtgagaacagcatttattcggttttgagaatgagttaccttagcctcccttacaatctgaagcattgttttgcttatt 100  Q
    |||||||||||||||||  || |||| | || ||||||||| ||| | |||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  6245240 gatttgtggcgtttacctgagagtgacagcaacatttattccgttctaagaatgagttaccttaacctcccttccaatctgaagcattgttttgcttatt 6245141  T
Q  101 gttctatatttcccaagggttatgagtttgaaaaggatggattaatcaagctttggatggcacaaggtttgctaaagggaatagcca---ttaatgaaga 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||    | | |||||    
T  6245140 gttctatatttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcagaaggtttgataaagggaatagccaaagatgaagaaga 6245041  T
Q  198 gttgggtaataaattcttcaatgagctagtgtcaatgtcgtttttccaacaatcagcaattatgccattctgggctggtaagtac 282  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6245040 gttgggtaataaattcttcaatgatctagtgtcaatgtcgtttttccaacaatcagcaattatgccattctgggctggtaagtac 6244956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 6168844 - 6168550
Alignment:
Q  1 gatttgtggcgtttacccaagggtgagaacagcatttattcggttttgagaatgagttaccttagcctcccttacaatctgaagcattgttttgcttatt 100  Q
    ||||||||| ||||||| ||| |||| |  |||||||||||  || | |||  ||||||||||| ||||||||  |||||||||||||||||||| ||||    
T  6168844 gatttgtggagtttacctaagagtgacagaagcatttattcctttctaagacagagttaccttaacctcccttcaaatctgaagcattgttttgcatatt 6168745  T
Q  101 gttctatatttcccaagggttatgagtttgaaaaggatggattaatcaagctttggatggcacaaggtttgctaaag------ggaatagccattaat-- 192  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||      |||| || ||  |||      
T  6168744 gttctatatttcccaagggttataagtttgaaaaggatggattaatcaagctttggatggcacaaggtttgctaaagtgttgcggaaaagacaaaaatga 6168645  T
Q  193 -gaagagttgggtaataaattcttcaatgagctagtgtcaatgtcgtttttccaacaatcagcaattatgccattctgggctggtaagtactatt 286  Q
     ||||||||||||||| |||||||  || | |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6168644 agaagagttgggtaatgaattctttgatcatctagtgtcaatgtcatttttccaacaatcagcaattatgccattatgggctggtaagtactatt 6168550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 47 - 284
Target Start/End: Complemental strand, 7749909 - 7749663
Alignment:
Q  47 tgagaatgagttaccttagcctcccttacaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaaggatggattaat 146  Q
    ||||| ||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| |||  ||| |||||    
T  7749909 tgagattgaattaccttaacctcccttccaatctgaagcgttgttttgcttattgttctatatttccaaagggctatgagtttgagaagcgtgggttaat 7749810  T
Q  147 caagctttggatggcacaaggtttgctaaa------gggaatagccattaatgaag---agttgggtaataaattcttcaatgagctagtgtcaatgtcg 237  Q
    |||||||||||||||| |||| ||||||||      ||||| || ||  | |||||   ||||||||||| ||||||||||| | ||||||||||| |||    
T  7749809 caagctttggatggcagaaggcttgctaaagtgttggggaagagacaaaactgaagaacagttgggtaatgaattcttcaattatctagtgtcaatatcg 7749710  T
Q  238 tttttccaacaatcagcaattatgccattctgggctggtaagtacta 284  Q
    |||||||||||||||| || |||||| || ||||||||||| |||||    
T  7749709 tttttccaacaatcagtaactatgcctttatgggctggtaaatacta 7749663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 47 - 284
Target Start/End: Original strand, 6591475 - 6591721
Alignment:
Q  47 tgagaatgagttaccttagcctcccttacaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaaggatggattaat 146  Q
    ||||| |||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||| || ||||||    
T  6591475 tgagattgagttaccttaacctcccatccaatctgaagcgttgttttgcttattgttctatatttcccaagggctatgagtttgagaagggtgaattaat 6591574  T
Q  147 caagctttggatggcacaaggtttgctaaag----ggaatagccattaa--tgaag---agttgggtaataaattcttcaatgagctagtgtcaatgtcg 237  Q
    |||||||||||||||| |||| |||||||||    || | || ||  ||  |||||   ||||||| ||| ||||||||||| | ||||||||||| |||    
T  6591575 caagctttggatggcagaaggcttgctaaagtgttgggaaagacacaaaagtgaagaaaagttgggcaatgaattcttcaatcatctagtgtcaatatcg 6591674  T
Q  238 tttttccaacaatcagcaattatgccattctgggctggtaagtacta 284  Q
    |||||||||||||||| || ||||||||| |||||||| ||| ||||    
T  6591675 tttttccaacaatcagtaactatgccattatgggctggcaagcacta 6591721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 6142239 - 6141947
Alignment:
Q  1 gatttgtggcgtttacccaagggtgagaacagcatttattcggttttgagaatgagttaccttagcctcccttacaatctgaagcattgttttgcttatt 100  Q
    |||||||||||||||||  |||||||    | |||| |||| ||| ||||||| |||||||||||||||||||   ||||||||||||||||||||||||    
T  6142239 gatttgtggcgtttaccagagggtgacggaaacattaattccgttctgagaatcagttaccttagcctcccttctgatctgaagcattgttttgcttatt 6142140  T
Q  101 gttctatatttcccaagggttatgagtttgaaaaggatggattaatcaagctttggatggcacaaggtttgctaaa------gggaatagccatta--at 192  Q
    ||||||||||||||||||| ||||||||||| |||| || |||||||||||||||||||||| |||||||  | ||        || | | || ||  ||    
T  6142139 gttctatatttcccaagggctatgagtttgagaagggtgaattaatcaagctttggatggcagaaggtttcttgaaccatttcagagttgacagtagcat 6142040  T
Q  193 -gaagagttgggtaataaattcttcaatgagctagtgtcaatgtcgtttttccaacaatcagcaattatgccattctgggctggtaagtacta 284  Q
     |||||||| |||||| |||||||| || | ||||||||||| || |||||||||||||||| |||||||||||| ||| |||||||||||||    
T  6142039 agaagagttaggtaatgaattcttcgattatctagtgtcaatatcatttttccaacaatcagtaattatgccattatggtctggtaagtacta 6141947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 53 - 284
Target Start/End: Complemental strand, 6899989 - 6899749
Alignment:
Q  53 tgagttaccttagcctcccttacaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaaggatggattaatcaagct 152  Q
    |||||||||||| |||||||| |||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||| |||| || | ||||||||||    
T  6899989 tgagttaccttaacctcccttccaatctgaagcattgttttgattattgttctttatttccaaagggctatgagtttgagaagggtgaagtaatcaagct 6899890  T
Q  153 ttggatggcacaaggtttgctaaag------ggaatagcc---attaatgaagagttgggtaataaattcttcaatgagctagtgtcaatgtcgtttttc 243  Q
    |||||||||| |||||||||| |||      |||| || |   | | | ||||||||||||||| |||||||||| || |||||||||||  | ||||||    
T  6899889 ttggatggcagaaggtttgctgaagtgttgcggaagagacaaaagtgaagaagagttgggtaatgaattcttcaacgatctagtgtcaataacatttttc 6899790  T
Q  244 caacaatcagcaattatgccattctgggctggtaagtacta 284  Q
    || |||||| ||||||||||||| ||||||||||| |||||    
T  6899789 cagcaatcaacaattatgccattatgggctggtaaatacta 6899749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 47 - 264
Target Start/End: Complemental strand, 6917008 - 6916782
Alignment:
Q  47 tgagaatgagttaccttagcctcccttacaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaaggatggattaat 146  Q
    ||||||||||||||||||  ||| |||  ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||| || ||||||    
T  6917008 tgagaatgagttaccttaatctctcttcaaatctgaagcattgttttgcttactgttccatatttcccaagggctatgagtttgagaagggtgaattaat 6916909  T
Q  147 caagctttggatggcacaaggtttgctaaag------ggaatagcc---attaatgaagagttgggtaataaattcttcaatgagctagtgtcaatgtcg 237  Q
    |||||||||||||||| |||||||||| |||      |||| || |   | | | ||||||||||||||| |||| |||||||| ||||||||||| ||     
T  6916908 caagctttggatggcagaaggtttgctgaagtgttgtggaagagacaaaagtgaagaagagttgggtaatgaatttttcaatgatctagtgtcaatatca 6916809  T
Q  238 tttttccaacaatcagcaattatgcca 264  Q
    |||||||||| ||||| ||||||||||    
T  6916808 tttttccaacgatcagtaattatgcca 6916782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 6882457 - 6882287
Alignment:
Q  1 gatttgtggcgtttacccaagggtgagaacagcatttattcggttttgagaatgagttaccttagcctcccttacaatctgaagcattgttttgcttatt 100  Q
    |||||||||||||||||| ||||||| | |  |||| | | | |  ||||| |||||||||||| |||||||| ||||||||||| ||||||||||||||    
T  6882457 gatttgtggcgtttacccgagggtgaaatctacattaacttgttactgagattgagttaccttatcctcccttccaatctgaagcgttgttttgcttatt 6882358  T
Q  101 gttctatatttcccaagggttatgagtttgaaaaggatggattaatcaagctttggatggcacaaggtttg 171  Q
    ||||||||||||||||||| |||||| |||| |||| || | |||| || |||||||||||| ||||||||    
T  6882357 gttctatatttcccaagggctatgagcttgagaagggtgaactaattaaactttggatggcagaaggtttg 6882287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 6265644 - 6265469
Alignment:
Q  1 gatttgtggcgtttacccaagggtgagaacagcatttattcggttttgagaatgagttaccttagcctcccttacaatctgaagcattgttttgcttatt 100  Q
    ||||||||| |||||||| ||||||| ||| ||||| |||  | | |||| |||  ||||||||||||||||  ||||||||||| ||||||||||| ||    
T  6265644 gatttgtggtgtttacccgagggtgacaactgcattaattttgctctgaggatgcattaccttagcctccctcccaatctgaagcgttgttttgcttgtt 6265545  T
Q  101 gttctatatttcccaagggttatgagtttgaaaaggatggattaatcaagctttggatggcacaaggtttgctaaa 176  Q
    | ||||   ||||||||||||||||||||||  ||| || |||||||| ||||||||||||| |||||||| ||||    
T  6265544 ggtctaatcttcccaagggttatgagtttgaggagggtgaattaatcaggctttggatggcagaaggtttgttaaa 6265469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 171
Target Start/End: Original strand, 8569094 - 8569219
Alignment:
Q  46 ttgagaatgagttaccttagcctcccttacaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaaggatggattaa 145  Q
    |||||| ||||||||| ||  ||||||| |||||| |||| ||||||||| |||||||| || ||||||||||||||||| |||||||| |||| ||| |    
T  8569094 ttgagattgagttaccataatctcccttccaatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatgaattga 8569193  T
Q  146 tcaagctttggatggcacaaggtttg 171  Q
    ||||||||||||||||| ||||||||    
T  8569194 tcaagctttggatggcagaaggtttg 8569219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 173
Target Start/End: Complemental strand, 7587755 - 7587628
Alignment:
Q  46 ttgagaatgagttaccttagcctcccttacaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaaggatggattaa 145  Q
    |||||| ||||||||| ||  ||||| | |||||| |||| ||||||||| | |||||| |||||||||||||||||||  |||||||| |||| ||| |    
T  7587755 ttgagattgagttaccataatctcccatccaatctaaagcgttgttttgccttttgttcaatatttcccaagggttatgtatttgaaaaagatgaattga 7587656  T
Q  146 tcaagctttggatggcacaaggtttgct 173  Q
    ||||||||||||||||| ||||||||||    
T  7587655 tcaagctttggatggcagaaggtttgct 7587628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 173
Target Start/End: Complemental strand, 8471444 - 8471317
Alignment:
Q  46 ttgagaatgagttaccttagcctcccttacaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaaggatggattaa 145  Q
    |||||| ||||||||| || ||||||||  ||||||||||  |||||||| || || ||||||||||| ||||||| ||||||||| | ||||| ||| |    
T  8471444 ttgagattgagttaccataacctcccttctaatctgaagcgctgttttgcctactgctctatatttcctaagggttttgagtttgacagggatgaattga 8471345  T
Q  146 tcaagctttggatggcacaaggtttgct 173  Q
    ||||||||||||||||| ||||||||||    
T  8471344 tcaagctttggatggcagaaggtttgct 8471317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 171
Target Start/End: Original strand, 6520311 - 6520436
Alignment:
Q  46 ttgagaatgagttaccttagcctcccttacaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaaggatggattaa 145  Q
    |||||| ||||||||| ||  ||||||| |||||| |||| ||||||||| ||||||||||| ||||||||||||||| | ||| |||| |||  ||| |    
T  6520311 ttgagattgagttaccataatctcccttccaatctaaagcgttgttttgcatattgttctatttttcccaagggttataaatttaaaaaagataaattga 6520410  T
Q  146 tcaagctttggatggcacaaggtttg 171  Q
    ||||||||||||||||| ||||||||    
T  6520411 tcaagctttggatggcagaaggtttg 6520436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 6722222 - 6722328
Alignment:
Q  53 tgagttaccttagcctcccttacaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaaggatggattaatcaagct 152  Q
    |||||| | ||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||  || | |||| |||||    
T  6722222 tgagtttctttaacctcccttccgatctgaagcgttgttttgcttattgttctatatttcccaagggctatgagtttgagaagagtgaactaattaagct 6722321  T
Q  153 ttggatg 159  Q
    |||||||    
T  6722322 ttggatg 6722328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 173
Target Start/End: Original strand, 6839047 - 6839180
Alignment:
Q  40 tcggttttgagaatgagttaccttagcctcccttacaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaaggatg 139  Q
    |||| ||||||| ||||||||| || |||||||| || | |||| |  |||||||| || |||||| ||||||| | ||||| ||||||||| | |||||    
T  6839047 tcggctttgagattgagttaccataacctcccttccagtttgaaacgctgttttgcctactgttctgtatttcctaggggttttgagtttgacagggatg 6839146  T
Q  140 gattaatcaagctttggatggcacaaggtttgct 173  Q
     ||| |||||||||||||||||| ||||||||||    
T  6839147 aattgatcaagctttggatggcagaaggtttgct 6839180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 8589588 - 8589485
Alignment:
Q  67 ctcccttacaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaaggatggattaatcaagctttggatggcacaag 166  Q
    ||||||| || ||| |||||||| ||| |||||||||| || ||||||||||||||||| |||||||| | || ||| |||||||| ||||||||| |||    
T  8589588 ctcccttccattctaaagcattgcttttcttattgttccatttttcccaagggttatgaatttgaaaaaggtgaattgatcaagctctggatggcagaag 8589489  T
Q  167 gttt 170  Q
    ||||    
T  8589488 gttt 8589485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 6947125 - 6947024
Alignment:
Q  70 ccttacaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaaggatggattaatcaagctttggatggcacaaggtt 169  Q
    |||| ||||| ||||| ||||||||| ||||| || || |||||||||||||||   |||||||| |||| ||| |||||||||||||||||| ||||||    
T  6947125 ccttccaatcggaagcgttgttttgcctattgctccatttttcccaagggttatacatttgaaaaagatgaattgatcaagctttggatggcagaaggtt 6947026  T
Q  170 tg 171  Q
    ||    
T  6947025 tg 6947024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 6882255 - 6882175
Alignment:
Q  194 aagagttgggtaataaattcttcaatgagctagtgtcaatgtcgtttttccaacaatcagcaattatgccattctgggctg 274  Q
    ||||||| |||||| ||||||||||| |  | |||||||| || |||||||||||||||| |||||||||||| |||||||    
T  6882255 aagagttaggtaatgaattcttcaatcatttggtgtcaatatcttttttccaacaatcagtaattatgccattatgggctg 6882175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 280
Target Start/End: Complemental strand, 6265443 - 6265356
Alignment:
Q  193 gaagagttgggtaataaattcttcaatgagctagtgtcaatgtcgtttttccaacaatcagcaattatgccattctgggctggtaagt 280  Q
    |||||||| || ||| |||||||| || | |||||||||||||| |||||||||||||||| | | |||||||| ||| | |||||||    
T  6265443 gaagagttagggaatgaattcttcgatcaactagtgtcaatgtcatttttccaacaatcagtattgatgccattatggaccggtaagt 6265356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 6554618 - 6554714
Alignment:
Q  77 atctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaaggatggattaatcaagctttggatggcacaaggtttgct 173  Q
    |||| |||| ||| ||||| |||||||| || || |||||||| |||   |||||||| || | ||| |||||||||||||||||| ||||||||||    
T  6554618 atctaaagcgttgctttgcgtattgttccattttccccaagggctatagatttgaaaaagaagtattgatcaagctttggatggcagaaggtttgct 6554714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 6735839 - 6735743
Alignment:
Q  77 atctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaaggatggattaatcaagctttggatggcacaaggtttgct 173  Q
    |||| |||| ||| ||||| |||||||| || || ||||||||||||   ||| |||| || | ||| |||||||||||||||||| ||||||||||    
T  6735839 atctaaagcgttgctttgcctattgttccattttccccaagggttatagatttaaaaaagaagtattgatcaagctttggatggcagaaggtttgct 6735743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 171
Target Start/End: Complemental strand, 8454533 - 8454409
Alignment:
Q  47 tgagaatgagttaccttagcctcccttacaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaaggatggattaat 146  Q
    ||||| ||||||||| ||  |||||||  ||||| |||| ||| ||| | |||||||| || |||||||||||| || | ||| |||| |||| | | ||    
T  8454533 tgagattgagttaccataatctcccttctaatctaaagcgttgcttttcctattgttccatttttcccaagggtcataaatttaaaaaagatgaactgat 8454434  T
Q  147 caagctttggatggcacaaggtttg 171  Q
    || ||||||||||||| ||||||||    
T  8454433 catgctttggatggcagaaggtttg 8454409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 6480197 - 6480256
Alignment:
Q  112 cccaagggttatgagtttgaaaaggatggattaatcaagctttggatggcacaaggtttg 171  Q
    ||||||||||||   |||||||| |||| ||| |||||||||||||||||| ||||||||    
T  6480197 cccaagggttatacatttgaaaaagatgaattgatcaagctttggatggcagaaggtttg 6480256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 168
Target Start/End: Original strand, 6448937 - 6449058
Alignment:
Q  47 tgagaatgagttaccttagcctcccttacaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaaggatggattaat 146  Q
    ||||| ||||||||| ||  ||||||| || ||| |||  ||| ||||| ||||| || || || || |||||||||   ||| ||||||||| ||| ||    
T  6448937 tgagattgagttaccataatctcccttccagtctaaagtgttgctttgcctattgctccattttccctaagggttatagatttaaaaaggatgaattgat 6449036  T
Q  147 caagctttggatggcacaaggt 168  Q
    |||||||||||||||| |||||    
T  6449037 caagctttggatggcagaaggt 6449058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 35140445 - 35140742
Alignment:
Q  1 gatttgtggcgtttacccaagggtgagaacagcat---ttattcggttttgagaatgagttaccttagcctcccttacaatctgaagcattgttttgctt 97  Q
    |||||| ||||||||||||||||||| | |||||    |||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  35140445 gatttgcggcgtttacccaagggtgacagcagcaacaattattccgttctgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcat 35140544  T
Q  98 attgttctatatttcccaagggttatgagtttgaaaaggatggattaatcaagctttggatggcacaaggtttgctaaaggg------aatagccattaa 191  Q
    ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||      ||||||||  ||    
T  35140545 attattctatatttcccaagggttatgagtttgaaaatgatggattaatcaagctttggatgacagaaggtttgctaaagggttgggaaatagccaaaaa 35140644  T
Q  192 t---gaagagttgggtaataaattcttcaatgagctagtgtcaatgtcgtttttccaacaatcagcaattatgccattctgggctggtaagtactatt 286  Q
    |   ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  35140645 tgaagaagagttgggtaataaattcttcaatgatctagtgtcaatgtcgtttttccaaaaatcagcaattctgccattctgggctggtaagtgctatt 35140742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 173
Target Start/End: Original strand, 6573438 - 6573571
Alignment:
Q  40 tcggttttgagaatgagttaccttagcctcccttacaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaaggatg 139  Q
    ||||| |||||| ||||||| | ||  ||||||| |||||| |||| ||||||||| |||||||| |||||||||||||||||| | |||||||| ||||    
T  6573438 tcggtattgagattgagttatcataatctcccttccaatctaaagcgttgttttgcatattgttccatatttcccaagggttataaatttgaaaaagatg 6573537  T
Q  140 gattaatcaagctttggatggcacaaggtttgct 173  Q
     ||| ||||| |||||||||||  ||||||||||    
T  6573538 aattgatcaacctttggatggctgaaggtttgct 6573571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 25242289 - 25242409
Alignment:
Q  53 tgagttaccttagcctcccttacaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaaggatggattaatcaagct 152  Q
    ||||||||| ||  ||||||| ||||||||||| |||||||  ||| ||||| |||||||| || |||||||  |||   |||| || ||||||||||||    
T  25242289 tgagttaccataatctcccttccaatctgaagcgttgttttagttactgttccatatttcctaaaggttatgctttttgcaagggtgaattaatcaagct 25242388  T
Q  153 ttggatggcacaaggtttgct 173  Q
    |||||| ||| |||| |||||    
T  25242389 ttggatagcataaggcttgct 25242409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 7677 - 7753
Alignment:
Q  97 tattgttctatatttcccaagggttatgagtttgaaaaggatggattaatcaagctttggatggcacaaggtttgct 173  Q
    |||||||| || ||||||||||| |||   |||||||| || | ||| |||||||||||||||| | ||||||||||    
T  7677 tattgttccatttttcccaagggctatagatttgaaaaagaagtattgatcaagctttggatgggagaaggtttgct 7753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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