View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_31 (Length: 295)
Name: NF1490_low_31
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 4664034 - 4664300
Alignment:
| Q |
21 |
atggacaaatcattcattgaacattcagcttggctggtttaagaagctgaaaccttccttttgtacaactaaacaaggtaacatataacattcattgacc |
120 |
Q |
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| T |
4664034 |
atggacaaatcattcattgaacattcagcttggctggttcaagaagctgaagccttccttttgtacaactaaacaaggtaacatataacattcattgacc |
4664133 |
T |
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| Q |
121 |
atcccaaatgaaactattgtatgaaattttccaataac--aacnnnnnnnaatcctctgctatgtcacagattgtgatagctacttcaaaaggtcactct |
218 |
Q |
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| T |
4664134 |
atcccaaatgaaaccattgtatgaaattttccaataacaaaactttttttaatcctctgctatgtcacagattgtgatagctacttcaaaaggtcactct |
4664233 |
T |
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| Q |
219 |
tcgtggtgggagagataggtggtaatgattataactatgctgcctttgctggagatattattcatct |
285 |
Q |
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| T |
4664234 |
tcgtggtgggagagataggtggtaatgattataactatgctgcctttgctggagatattactcatct |
4664300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 4667477 - 4667740
Alignment:
| Q |
21 |
atggacaaatcattcattgaacattcagcttggctggtttaagaagctgaaaccttccttttgtacaactaaacaaggtaacatataacattcattgacc |
120 |
Q |
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|||| |||||||||||||||||||| | ||||||||||| |||||||||||||||||||| || |||||||||||||||||||| | ||||||||| |
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| T |
4667477 |
atgggcaaatcattcattgaacatttaacttggctggttcaagaagctgaaaccttccttgtgcacaactaaacaaggtaacattgag---tcattgacc |
4667573 |
T |
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| Q |
121 |
atcccaaatgaaactattgtatgaaattttccaataacaacnnnnnnn---aatcctctgctatgtcacagattgtgatagctacttcaaaaggtcactc |
217 |
Q |
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| T |
4667574 |
atcccaaatgaaactattgtatgaaattt-ccaataacaaaacttgtttttaatcctctgctatgtcacagattgtgatagctacttcaaaaggccactc |
4667672 |
T |
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| Q |
218 |
ttcgtggtgggagagataggtggtaatgattataactatgctgcctttgctggagatattattcatct |
285 |
Q |
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| T |
4667673 |
tttgtggtgggagagataggtggtaatgattataactatgctgcctttgctggagatattactcatct |
4667740 |
T |
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