View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_32 (Length: 291)
Name: NF1490_low_32
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 52158271 - 52158549
Alignment:
| Q |
1 |
aagagagatgagtaggaaatcacctcaagaactcctccattcgaatactttaaaactcgaagaaaagcttttgtccgttgagttttcgcttttgctacac |
100 |
Q |
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| T |
52158271 |
aagagagatgagtaggaaatcacctcaagaactcctccattcgaatactttaaaactcgaagaaaagcttttgtccgttgagttttcgcttttgctacac |
52158370 |
T |
|
| Q |
101 |
aaaataacatgttgtcaccaacaattctacaaataaagaattaaacaactaattgcagcagtaaacaggttgaccacatgtaatcacctacacagagtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52158371 |
aaaataacatgttgtcaccaacaattctacaaataaagaattaaacaactaattgcagcagtaaacaggttgaccacatgtaatcacctacacagagtgg |
52158470 |
T |
|
| Q |
201 |
aaagaagatttctgctctcacctccctttctattctttttgttcaaccaagataatcttaccagtatataaacaagata |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
52158471 |
aaagaagatttctgctctcacctccctttctattctttttgttcaaccaacataatcttaccagtatataaacaagata |
52158549 |
T |
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