View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_34 (Length: 285)
Name: NF1490_low_34
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 24 - 269
Target Start/End: Complemental strand, 38739667 - 38739422
Alignment:
| Q |
24 |
gcttgtgaggtgaagacaatttctaacattcacctccattccgaaacaaaaaagttacttctcttttcactcgattggcaaaatattatacagggatttt |
123 |
Q |
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| T |
38739667 |
gcttgtgaggtggagacaatttctaacattcacctccattccgaaacaaaaaagttacttctcttttcattcgattggcaaaatattatacagggatttt |
38739568 |
T |
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| Q |
124 |
ctttattttctcatgtaatatatactccaaagtaaccatcctttcatatatcacatttgtctctcgatttgatcttttgctgtctattccttattgtcat |
223 |
Q |
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| T |
38739567 |
ctttattttctcatgtaatatatactccaaagtaaccatcctttcatatatcacatttgtctctcgatttgatcttttgctgtctattccttattgtcat |
38739468 |
T |
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| Q |
224 |
gtattgcctctttatattcaactttccttttttgtaactatattca |
269 |
Q |
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| T |
38739467 |
gtattgcctctttatattcaactttccttttttgtaactatattca |
38739422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 79 - 240
Target Start/End: Complemental strand, 38744280 - 38744120
Alignment:
| Q |
79 |
tacttctcttttcactcgattggcaaaatattatacagggat---tttctttattttctcat-gtaatatatactccaaagtaaccatcctttcatatat |
174 |
Q |
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|||||||||||||| | || || || |||||| ||||||||| |||||| |||||||||| ||||| ||||||||||| ||||| || || || | |
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| T |
38744280 |
tacttctcttttcatttgaatgacagaatattctacagggatcattttcttcattttctcattgtaatgtatactccaaa----ccatcatt-caaatgt |
38744186 |
T |
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| Q |
175 |
cacatttgtctctcgatttgatcttttgctgtctattccttattgtcatgtattgcctctttatat |
240 |
Q |
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| T |
38744185 |
cacatttgtctctcaattttatcttttgctgtcagttccttattgtcctctattgcctctttatat |
38744120 |
T |
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