View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_36 (Length: 277)
Name: NF1490_low_36
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 1344901 - 1345022
Alignment:
| Q |
22 |
gtttctttatcaattaaatcattctatcgataannnnnnngtttaccataatcaatttctattccttctatctttcagaatgttattgataatcattttg |
121 |
Q |
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| T |
1344901 |
gtttctttatcaattaaatcattctatcgataatttttttgtttaccataatcaatttctattccttctatctttcagaatgttattgataatcattttg |
1345000 |
T |
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| Q |
122 |
aaagttcaatttcttaaattca |
143 |
Q |
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| T |
1345001 |
aaagttcaattttttaaattca |
1345022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 39266434 - 39266515
Alignment:
| Q |
62 |
gtttaccataatcaatttctattccttctatctttcagaatgttattgataatcattttgaaagttcaatttcttaaattca |
143 |
Q |
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| T |
39266434 |
gtttatcatgatcaatttctattccttctatctttcggtatgttgtcgataatcattttgaaaattcaatttgttaaattca |
39266515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 33912042 - 33911961
Alignment:
| Q |
62 |
gtttaccataatcaatttctattccttctatctttcagaatgttattgataatcattttgaaagttcaatttcttaaattca |
143 |
Q |
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| T |
33912042 |
gtttatcatgatcaatttttattccttctatcttttggtatgttgtggataatcattttgaaaattcaatttgttaaattca |
33911961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 35781561 - 35781451
Alignment:
| Q |
14 |
atcattccgtttctttatcaattaaatcattctatcgataannnnnnngtttaccataatcaatttctattccttctatctttcagaatgttattgataa |
113 |
Q |
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| T |
35781561 |
atcattccgtttctttatcaattaaatcattctatcgataatttttttgtttaccatgatcaatctctattccttctatcttccagaatgttattgataa |
35781462 |
T |
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| Q |
114 |
tcattttgaaa |
124 |
Q |
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||||||||||| |
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| T |
35781461 |
tcattttgaaa |
35781451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 30951749 - 30951829
Alignment:
| Q |
62 |
gtttaccataatcaatttctattccttctatctttcagaatgttattgataatcattttgaaagttcaatttcttaaattc |
142 |
Q |
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| T |
30951749 |
gtttatcatgatcaatttctattccttctatctttcagtatgttgtcgataatcattttgaaaattcaatttgttaaattc |
30951829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 23585688 - 23585768
Alignment:
| Q |
63 |
tttaccataatcaatttctattccttctatctttcagaatgttattgataatcattttgaaagttcaatttcttaaattca |
143 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||| || || | |||||||||||||||| |||||||| ||||||||| |
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| T |
23585688 |
tttatcataatcaattattattccttctatctttcagtatattgtcgataatcattttgaaaattcaatttgttaaattca |
23585768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 41842093 - 41842055
Alignment:
| Q |
14 |
atcattccgtttctttatcaattaaatcattctatcgat |
52 |
Q |
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| T |
41842093 |
atcattccgtttctttatcaattaaattattctatcgat |
41842055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 41842056 - 41842021
Alignment:
| Q |
72 |
atcaatttctattccttctatctttcagaatgttat |
107 |
Q |
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|||||||||||||||||||||||| ||||||||||| |
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| T |
41842056 |
atcaatttctattccttctatcttccagaatgttat |
41842021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 143
Target Start/End: Complemental strand, 4889780 - 4889752
Alignment:
| Q |
115 |
cattttgaaagttcaatttcttaaattca |
143 |
Q |
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| T |
4889780 |
cattttgaaagttcaatttcttaaattca |
4889752 |
T |
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