View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1490_low_39 (Length: 265)
Name: NF1490_low_39
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 36163185 - 36163010
Alignment:
| Q |
7 |
tcgaaaaatatcctatacattcaaatgggcacataggtgtgcctaaagatctagctgatattgttgagtcaaccattggagctcttttcattgattgcaa |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36163185 |
tcgaagaatatcctatacattcaaatgggcacataggtgtgcctaaagatctagctgatattgttgagtcaaccattggagctcttttcattgattgcaa |
36163086 |
T |
|
| Q |
107 |
ctcatccctcgaaattgtgtggaaggtattcactaatttttcacataatatgatatatttaaaaatccatcaaaag |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36163085 |
ctcatccctcgaaattgtgtggaaggtattcactaatttttcacttaatatgatatatttaaaaatccatcaaaag |
36163010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 36158078 - 36157912
Alignment:
| Q |
15 |
tatcctatacattcaaatgggcacataggtgtgcctaaagatctagctgatattgttgagtcaaccattggagctcttttcattgattgcaactcatccc |
114 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
36158078 |
tatcctatacattcaaatgggcacatacatgtgcctaaagatctagctgatatggttgagtcaacgattggagctctcttcattgattgtgactcatccc |
36157979 |
T |
|
| Q |
115 |
tcgaaattgtgtggaaggtattcactaatttttcacataatatgatatatttaaaaatccatcaaaag |
182 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| || | ||||||||| ||||||||||||||| |
|
|
| T |
36157978 |
tcgaaattgtgtggaaggtactcaataatttttcacttattgcgatatattt-aaaatccatcaaaag |
36157912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 36081399 - 36081325
Alignment:
| Q |
60 |
gctgatattgttgagtcaaccattggagctcttttcattgattgcaactcatccctcgaaattgtgtggaaggta |
134 |
Q |
| |
|
||||||||||||||||||||||| || || | ||| ||||||| ||||||| |||||| ||||||||||||| |
|
|
| T |
36081399 |
gctgatattgttgagtcaaccatcggtgcaatcttcgttgattgtggctcatccatcgaaactgtgtggaaggta |
36081325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University