View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_4 (Length: 577)
Name: NF1490_low_4
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 577
Target Start/End: Complemental strand, 34817120 - 34816559
Alignment:
| Q |
8 |
agattatactcgaaggagctttgaagaaggaaaagaggacaaatcagacttcaggagtatcagaagatcactcgaagaaaggttacaactctttcaaccc |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| |||||| | | |
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| T |
34817120 |
agataatactcgaaggagctttgaagaaggaaaagatgacaaatcagacctcaggagtatcagaagatccctcgaagaaaggttacgactcttccta--- |
34817024 |
T |
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| Q |
108 |
gacaacctacttttaatacgatcaatcaaatgaaacaacaaattcatctttcacgaatctccaccaatagacaaccccatatataagaagagaagacacc |
207 |
Q |
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| T |
34817023 |
----acctacttttaatacgatcaat--aatgaaacaacaaattcatctttcacgaatctccaccaatagacaaccccatgtataagaagagaagacacc |
34816930 |
T |
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| Q |
208 |
caattttataattaataaccaaagacacctcatttagccaagagtcggctacattaaccccaaatgtgtacnnnnnnnnng-gacaaaatattatatttg |
306 |
Q |
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| T |
34816929 |
caattttataattaataaccaaagacgcctcatttagccaagagtcggctacattaaccccaaatgtgtacttttcttttttgacaaaatattatatttg |
34816830 |
T |
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| Q |
307 |
caattaaataaaggagaagatgtattgtttgtagcccgtnnnnnnnngtaatgtattgcatttttaannnnnnnnn-ctttcagaatcacttaattcatg |
405 |
Q |
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| T |
34816829 |
caattaaataaaggagaaagtgtattgtttgtagcccgtaaaaaaaagtaatgtattgcacttttaattttttttctctttcagaatcacttaattcatg |
34816730 |
T |
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| Q |
406 |
cattgttttcattnnnnnnncgtatgacttttttaatgacacaggcatataagagtcatgtgatgatatgtgtgtttatatattacattgaagatactcg |
505 |
Q |
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| T |
34816729 |
cattgttttcattaaaaaaacgtatgacttttttaatgacacagtcatataagagtcatgtaatgatatgtgtgtttatataatacattgaagatactcg |
34816630 |
T |
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| Q |
506 |
taacagtcgattttaatattattctagttacaaactagtggaagaagctcacagacaagaacaataatgaaa |
577 |
Q |
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| T |
34816629 |
taacagtcgatttt-atattattctagttacaaaccagtggaagaagctcacagacaagaacaataatgaaa |
34816559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 42274182 - 42274063
Alignment:
| Q |
109 |
acaacctacttttaatacgatcaatcaaatgaaacaacaaattcatctttcacgaatctccaccaatagacaaccccatatataagaagagaagacaccc |
208 |
Q |
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| T |
42274182 |
acaacctacttttaatacaatcaatcaattgaaacaaaaaatccagctcacacgaatttccatcaatagataaccccaaatataagaaggccaaacaacc |
42274083 |
T |
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| Q |
209 |
aattttataattaataacca |
228 |
Q |
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| T |
42274082 |
aattttacaattcataacca |
42274063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 102 - 213
Target Start/End: Complemental strand, 35417812 - 35417702
Alignment:
| Q |
102 |
caacccgacaacctacttttaatacgatcaatcaaatgaaacaacaaattcatctttcacgaatctccaccaatagacaaccccatatataagaagagaa |
201 |
Q |
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||||| ||||||||| ||| ||||||||||| |||| || || | ||||||| ||| | |||||| |||||||||||| |||||| |||||| ||| ||| |
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| T |
35417812 |
caacctgacaacctattttcaatacgatcaaccaaaggataccagaaattcagcttacgcgaatcaccaccaatagacgaccccaaatataaaaag-gaa |
35417714 |
T |
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| Q |
202 |
gacacccaattt |
213 |
Q |
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| T |
35417713 |
gacacccaattt |
35417702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 24604833 - 24604879
Alignment:
| Q |
105 |
cccgacaacctacttttaatacgatcaatcaaatgaaacaacaaatt |
151 |
Q |
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| T |
24604833 |
cccgacaaccttcttttaatacgatcaatcagatgatacaaaaaatt |
24604879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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