View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_40 (Length: 264)
Name: NF1490_low_40
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 1361509 - 1361259
Alignment:
| Q |
2 |
ttgagtgattattactaattataaattttcaaattttatctataaaacttgacaaacttgaacatttttaacattgagaaaccaaacagtaatacaagac |
101 |
Q |
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| T |
1361509 |
ttgagtgattattactaattataaattttcaaattttatctataaaacttgacaaacttgagcatttttaacattgagtaaccaaacagtaatacacgac |
1361410 |
T |
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| Q |
102 |
ttcacaagacc-aaacagaaattgcagagagattaacataaaatgtgataatcaattgagtagaactagaacttgtctaaaagatttgctaataattgtt |
200 |
Q |
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| T |
1361409 |
ttcacaagacctaaacagaaattgcagagtgattaacataaaatgtgataatcaattgagtagaactagaactagtctaaaagatttgctaataattgtt |
1361310 |
T |
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| Q |
201 |
gagaagagttttatccataaggttactcatccctgtgattgtcacaatctc |
251 |
Q |
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| T |
1361309 |
gagaagagttttatccataaggttactcatccctgtgattgtcacaatctc |
1361259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 1350988 - 1350874
Alignment:
| Q |
1 |
cttgagtgattattactaattataaattttcaaattttatctataaaacttgacaaacttgaacatttttaacattgagaaaccaaacagtaataca-ag |
99 |
Q |
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| T |
1350988 |
cttgagtgattattactaattatgaattttcaaattttatcaataaaacttgacaaacttgagcatttttaacattaagaaaccaaacagtaatacacca |
1350889 |
T |
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| Q |
100 |
acttcacaagaccaa |
114 |
Q |
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| T |
1350888 |
acttcacaagaccaa |
1350874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 1350805 - 1350767
Alignment:
| Q |
192 |
ataattgttgagaagagttttatccataaggttactcat |
230 |
Q |
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| T |
1350805 |
ataattgttgagaagagttttgttcataaggttactcat |
1350767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 1344653 - 1344572
Alignment:
| Q |
12 |
attactaattataaattttcaaattttatctataaaacttgacaaacttgaacatttttaacattgagaaaccaaacagtaa |
93 |
Q |
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| T |
1344653 |
attactaattatgaattttcaaattacatctagaggacttcaaaaatttgattagttttaacattgagaaaccaaatagtaa |
1344572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 1354910 - 1354990
Alignment:
| Q |
12 |
attactaattataaattttcaaattttatctataaaacttgacaaacttgaacatttttaacattgagaaaccaaacagtaa |
93 |
Q |
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| T |
1354910 |
attactaattatgaattttcaaattacatctaaaaaacttcacaaatttgagca-ttctaacattaagaaactaaatagtaa |
1354990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 29051899 - 29051978
Alignment:
| Q |
14 |
tactaattataaattttcaaattttatctataaaacttgacaaacttgaacatttttaacattgagaaaccaaacagtaa |
93 |
Q |
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| T |
29051899 |
tactaattatgaattttcaaattacatatagaaaacttcacaaatttgagcatttctaacattgagaaaccaaatagtaa |
29051978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 13590735 - 13590657
Alignment:
| Q |
15 |
actaattataaattttcaaattttatctataaaacttgacaaacttgaacatttttaacattgagaaaccaaacagtaa |
93 |
Q |
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|||||| || |||||||||||| |||||||||||| ||||| |||| |||||||| || |||||||||||| ||||| |
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| T |
13590735 |
actaatcatgaattttcaaattacatctataaaactatacaaatttgagcatttttaccactgagaaaccaaatagtaa |
13590657 |
T |
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