View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_41 (Length: 261)
Name: NF1490_low_41
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 243
Target Start/End: Complemental strand, 6371700 - 6371462
Alignment:
| Q |
5 |
caatttcaatctttggatcttcgcttatcaacgctcatgtgctcatttcaccggaactttccctccccgaaatgctattcacacctccatcctccgtgat |
104 |
Q |
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| T |
6371700 |
caatttcgatctttgggtcttcgcttatcaacgctcatgtgctcatttcaccggaactttccctccccgaaatgctattcacacctccatcctccgtgat |
6371601 |
T |
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| Q |
105 |
cttctctcccttcgtaacgctgttcttcgtggtcgtttttgctggaatgacaaaacccatcaattgcttcgttcccccaacgacaaaaagttttcaaaac |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6371600 |
cttctctcccttcgtaacgctgttcttcgtggtcgtttttgctggaatgacaaaacccatcaattgcttcgttccccaaacgacaaaaagttttcaaaac |
6371501 |
T |
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| Q |
205 |
cgttatcaaaacgaaagcttgaagcttttgtacaatcca |
243 |
Q |
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| T |
6371500 |
cgttatcaaaacgaaagcttgaagcttttgtacaatcca |
6371462 |
T |
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