View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_42 (Length: 254)
Name: NF1490_low_42
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 4472437 - 4472204
Alignment:
| Q |
1 |
ccatctgtctttttctatctttactagcctctcaacctttgaattggtcccccaattcaaatcatggtccannnnnnnn-gttctctaaagttatgatcc |
99 |
Q |
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| T |
4472437 |
ccatctgtctttttctatctttactagcctctcaacctttgaattggtcccccaatttaaatcatggtccatttttttttgttctctaaagttatgatcc |
4472338 |
T |
|
| Q |
100 |
taactttattgatgttttataaaccacctataaagtagtgacacatacacacatactaaacacggcattgagattaacacgttgacaccaataaaatttt |
199 |
Q |
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| T |
4472337 |
taactttattgatgttttataaaccacctataaagcagtgacacatac--------taaacacgacattgagataaacacgtcgacactaataaaatttt |
4472246 |
T |
|
| Q |
200 |
gagaaatttacattattcaatgtgatcacaaatgtcgatgat |
241 |
Q |
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| T |
4472245 |
gaaaaatttacattattcaatgtgatcacaaatgtcggtgat |
4472204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 37496697 - 37496757
Alignment:
| Q |
176 |
acacgttgacaccaataaaattttgagaaatttacattattcaatgtgatcacaaatgtcg |
236 |
Q |
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| T |
37496697 |
acacgttgacaccgataattttttgagaaaatgacataattcaatgtaatcacaagtgtcg |
37496757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 10031562 - 10031617
Alignment:
| Q |
175 |
aacacgttgacaccaataaaattttgagaaatttacattattcaatgtgatcacaa |
230 |
Q |
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| T |
10031562 |
aacacgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaa |
10031617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 19369810 - 19369870
Alignment:
| Q |
176 |
acacgttgacaccaataaaattttgagaaatttacattattcaatgtgatcacaaatgtcg |
236 |
Q |
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|||||||||||| |||||||||||||||| | |||| ||||||||| ||||||| ||||| |
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| T |
19369810 |
acacgttgacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcg |
19369870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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