View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_48 (Length: 246)
Name: NF1490_low_48
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 33998600 - 33998831
Alignment:
| Q |
1 |
tcactccgcaacagtggaaaaatgggtcaaaatctctaactcaacaatgagaatatctaaatccattgaaaacaacaataataaaccatgttaagtaaca |
100 |
Q |
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| T |
33998600 |
tcactcagcaacagtggaaaaatgggtcaaaatctctaactcaacaatgggaatatccaaatccattgaaaacaacaataataaaccatgttaagtaaca |
33998699 |
T |
|
| Q |
101 |
taaaatattagtaaaatgagaaattactattaattaaaatgacattaatgactattttacaactgtttcataaaattttaattctaactcgtgaaattag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| | |
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| T |
33998700 |
taaaatattagtaaaatgagaaattactattaattaaagtgacattaatgactattttacaactgtttcataaaatttgaactctaactagtgaaatttg |
33998799 |
T |
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| Q |
201 |
aaattacaaggtcaaactcttaccaccgaact |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33998800 |
aaattacaaggtcaaactcttaccaccgaact |
33998831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 8744524 - 8744485
Alignment:
| Q |
120 |
gaaattactattaattaaaatgacattaatgactatttta |
159 |
Q |
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| T |
8744524 |
gaaattaatattaattaaaatgacattaatgactatttta |
8744485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 22610323 - 22610370
Alignment:
| Q |
120 |
gaaattactattaattaaaatgacattaatgactattttacaactgtt |
167 |
Q |
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| T |
22610323 |
gaaattattattaattaaattgacattaacgattattttacaactgtt |
22610370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 48727624 - 48727580
Alignment:
| Q |
119 |
agaaattactattaattaaaatgacattaatgactattttacaac |
163 |
Q |
| |
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|||||||| ||| || |||| |||||||||||||||||||||||| |
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| T |
48727624 |
agaaattattatgaactaaagtgacattaatgactattttacaac |
48727580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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