View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_49 (Length: 244)
Name: NF1490_low_49
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_49 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 27601575 - 27601818
Alignment:
| Q |
1 |
ataccattaggatgaaggagatttcaacttctattgaaaaaacattaatgatggtaatcgatgcatgtacacttagtccagagatagatttccagttcga |
100 |
Q |
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| T |
27601575 |
ataccattaggatgaaggagatttcaacttctattgaaaaaacattaatgatggtaatcgatgcatgtacacttagtccagagatagatttccagttcga |
27601674 |
T |
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| Q |
101 |
atgtttcgttgctgattgctaatatttttgccgagtcgtaattgggttgagctccaatcaccttggaaaccgccgaatggagatgcaagctttggctgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27601675 |
atgtttcgttgctgattgctaatatttttgccgagtcgtaattgggttgagctccaatcaccttggaaaccgccgaatggagatgcaagctttggctgat |
27601774 |
T |
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| Q |
201 |
accattttatcaagcccagactgtttattctaagtttcccattt |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27601775 |
accattttatcaagcccagactgtttattctaagtttcccattt |
27601818 |
T |
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