View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_50 (Length: 244)
Name: NF1490_low_50
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 44186158 - 44186390
Alignment:
| Q |
1 |
cttcgcaagtctatgtatattttagtacctatttccaatgaatgatagataacaagctaacaacatatacctatactccatgcaactaaatatccacgct |
100 |
Q |
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| T |
44186158 |
cttcgcaagtctatgtatattttagtacctatttccaatgaatgatagataacaagctaacaacatataccta--ctccatgcaactaaatatccacgct |
44186255 |
T |
|
| Q |
101 |
caaatatgcacactttgaaaaaacagtcttaatctccaaataattaacacaaatacaagatagaaatctatgtatcagtcaaaaaagagtaaaagtaatt |
200 |
Q |
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| T |
44186256 |
caaatatgcacactttgaaaaaacagtcttaatctccaaataattaacacaaatacaagatagaaatctatgtatcagtcaaaaaagagtaaaagtaatt |
44186355 |
T |
|
| Q |
201 |
aaatgcgacatctccaaaaaattccatatatcagt |
235 |
Q |
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| T |
44186356 |
aaatgcgacatctccaaaaaattccatatatcagt |
44186390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 40397620 - 40397673
Alignment:
| Q |
13 |
atgtatattttagtacctatttccaatgaatgatagataacaagctaacaacat |
66 |
Q |
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| T |
40397620 |
atgtacattttagtacctattttcaatcaatgagaaataacaagcaaacaacat |
40397673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 19162652 - 19162706
Alignment:
| Q |
13 |
atgtatattttagtacctatttccaatgaatgatagataacaagctaacaacata |
67 |
Q |
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| T |
19162652 |
atgtatattttagtacctacgtccaatcaatgatagataacaagctaacaacata |
19162706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 18887799 - 18887701
Alignment:
| Q |
135 |
tccaaataattaacacaaatacaagatagaaatctatgtatcagt-caaaaaagagtaaaagtaattaaatgcgacatctccaaaaaattccatatatca |
233 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||| | ||| ||| | ||||||||||| | ||||||||||| ||||||| ||||| |
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| T |
18887799 |
tccaaataattagcacaaatacaagat---aatctatgtatcagtccttaaaggagcataagtaattaaacacaacatctccaaagtattccatgtatca |
18887703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 18985431 - 18985358
Alignment:
| Q |
98 |
gctcaaatatgcacactttgaaaaa--acagtcttaatctccaaataattaacacaaatacaagatagaaatct |
169 |
Q |
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|||||||| ||||||| ||| |||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
18985431 |
gctcaaatttgcacacattggaaaagcacagttttaatctccaattaattaacacaaatacaagatagtaatct |
18985358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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