View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_53 (Length: 237)
Name: NF1490_low_53
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9329785 - 9329563
Alignment:
| Q |
1 |
ttacaatacccactctcttggtagcagatgattagtggatggtggtgacaatcaacactgcgtattatgagggcttaaaccgatgttgatgagatttttg |
100 |
Q |
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| T |
9329785 |
ttacaatacccactctcttggtagcagatgattagtggatggtggtgacaatcaaccgtgcgtattatgagggcttaaaccgatgttgatgagatttttg |
9329686 |
T |
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| Q |
101 |
caataagtgggtactagaagtgaagcacgctagaaaacttacttcaacagaaactaaaacactaaatcaaccaaaacgtagcagttccacacaaccctag |
200 |
Q |
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| T |
9329685 |
caataagtgggtactagaagtgaagcacgctagaaaacttacttcaacaaaaactaaaaccctaaatcaaccaaaacgtagcagttccacacaaccctag |
9329586 |
T |
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| Q |
201 |
aacgaaccttccttccttccaat |
223 |
Q |
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| T |
9329585 |
aacgaaccttccttccttccaat |
9329563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 216
Target Start/End: Complemental strand, 9321987 - 9321958
Alignment:
| Q |
187 |
ccacacaaccctagaacgaaccttccttcc |
216 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
9321987 |
ccacacaaccctagaacgaaccttccttcc |
9321958 |
T |
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