View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_54 (Length: 237)
Name: NF1490_low_54
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45472120 - 45471901
Alignment:
| Q |
1 |
tcaggttgttgtactccacaattcatacctaccatttttctatgagctcacaattcataccatcatcacctaccagttcaccccaacaaccactcttaaa |
100 |
Q |
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| T |
45472120 |
tcaggttgttgtactc-acaattcatacctaccatttttctatgagctcacaattcataccatcatcacctaccagttcaccccaacaaccactcttaaa |
45472022 |
T |
|
| Q |
101 |
taaactacgattcctaggatgaattcgaatttattcccacatgagcctttggtggccttcgtttgtatcaacaaaaagttattctcacatcacattaatg |
200 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45472021 |
taaactaccattcctaggatgatatcgaatttattcccacatgagcctttggtggccttcgtttgtatcaacaaaaagttattctcacatcacattaatg |
45471922 |
T |
|
| Q |
201 |
cataaaatatgactcaaatat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
45471921 |
cataaaatatgactcaaatat |
45471901 |
T |
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