View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_56 (Length: 236)
Name: NF1490_low_56
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 43576383 - 43576588
Alignment:
| Q |
16 |
gaagagttgccaagaggctcagcaaaacaacaaacaaaatcagcttcatgatttctaaatattccaccacaagctgagttgccaggatttccatttgaag |
115 |
Q |
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| T |
43576383 |
gaagagttgccaagaggctcagcaaaacaacaaacaaaatcagcttcatgatttctaaatattccaccacaagctgagttgccaggattttcatttgaag |
43576482 |
T |
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| Q |
116 |
ctccatcaatattgcacttaatccaaaattgaagaggaggactccaaatcacttccttgataattggagctctaggttgatgagtagagacattgaaggt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43576483 |
ctccatcaatattgcacttaatccaaaattgaagaggaggactccaaatcacttccttgataattggaactctaggttgatgagtagagacattgaaggt |
43576582 |
T |
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| Q |
216 |
cttgat |
221 |
Q |
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|||||| |
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| T |
43576583 |
cttgat |
43576588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 60 - 221
Target Start/End: Original strand, 32247359 - 32247520
Alignment:
| Q |
60 |
ttcatgatttctaaatattccaccacaagctgagttgccaggatttccatttgaagctccatcaatattgcacttaatccaaaattgaagaggaggactc |
159 |
Q |
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| T |
32247359 |
ttcatgatttctaaatattccaccacaagctgagctgccaggatttccatttgaagctccatcaatattgcacttaatccaagattgaagaggaggactc |
32247458 |
T |
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| Q |
160 |
caaatcacttccttgataattggagctctaggttgatgagtagagacattgaaggtcttgat |
221 |
Q |
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| T |
32247459 |
caaatcacttccttgataattggagctctaggttgatgagtagagacattgaaggtcttgat |
32247520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 21852377 - 21852563
Alignment:
| Q |
26 |
caagaggctcagcaaaacaacaaacaaaatcagcttcatgatttctaaatattccaccacaagctgagttgccaggatttccatttgaagctccatcaat |
125 |
Q |
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||||||| |||| ||| || |||| |||||| ||||||| || ||||| || || |||||| | |||| || ||||||||| | |||||||||||||| |
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| T |
21852377 |
caagaggttcagtaaagcagcaaagaaaatctgcttcattgttcctaaaaatgcctccacaacttaagtttcctggatttccaatggaagctccatcaat |
21852476 |
T |
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| Q |
126 |
attgcacttaatccaa-aattgaagaggaggactccaaatcacttccttgataattggagctctaggttgatgagtagagacattgaa |
212 |
Q |
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| T |
21852477 |
attgcacttaatccaagaattg-agaggtggactccagataacttctttaatagtaggagctctaggatgatgggtggaaacattgaa |
21852563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 10512802 - 10512882
Alignment:
| Q |
61 |
tcatgatttctaaatattccaccacaagctgagttgccaggatttccatttgaagctccatcaatattgcacttaatccaa |
141 |
Q |
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||||||| |||||| || |||||||| | ||||| |||||||| ||||||||||| ||| | || ||||| ||||||||| |
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| T |
10512802 |
tcatgatctctaaaaataccaccacatacagagtttccaggattaccatttgaagcaccaccgatgttgcatttaatccaa |
10512882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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