View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1490_low_57 (Length: 236)
Name: NF1490_low_57
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_57 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 44475404 - 44475185
Alignment:
| Q |
1 |
gccatcgttgtataaggtggcagactctggtatccaaccatctgttccaaacctaacgaagaacatactgcagattttgcctatacaatttgctggtacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44475404 |
gccatcgttgtataaggtggcagactctggtatccaaccatctgttccaaacctaacgaagaacatactgcagattttgcctatacaatttgcttgtacc |
44475305 |
T |
|
| Q |
101 |
agatcaaatggattcgtcgtgcaccgcttgagagaggaaccccgcatactaggatctggacttgaaataatctgcgtttatacacgtgcatggatatcga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44475304 |
agatcaaatggattcgtcgtgcaccgcttgagagaggaaccccgcatactaggatctggacttgaaataatctgcatttatacacgtgcatggatatcga |
44475205 |
T |
|
| Q |
201 |
accaatacatatatagttca |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
44475204 |
accaatacatatatagttca |
44475185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 44485604 - 44485525
Alignment:
| Q |
10 |
gtataaggtggcagactctggtatccaaccatctgttccaaacctaacgaagaacatactgcagattttgcctatacaat |
89 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
44485604 |
gtataaggtggcagactctggcatccaaccatttgttccaaacctaacaaagatcatattgcagattttgcctatacaat |
44485525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 44471315 - 44471251
Alignment:
| Q |
25 |
ctctggtatccaaccatctgttccaaacctaacgaagaacatactgcagattttgcctatacaat |
89 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| ||| |||| |||||||||| |||||||||| |
|
|
| T |
44471315 |
ctctggtatccaaccatctcttccaacactaacaaagtgcatattgcagatttttcctatacaat |
44471251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University