View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1490_low_59 (Length: 234)
Name: NF1490_low_59
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_59 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 52158946 - 52158734
Alignment:
| Q |
16 |
atattgacactgataattttttagaaaatgtcataattcaatgtaattacgtgtgttggtgacacatgtcggacac-aggacccgccttcatcaagtgtc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
52158946 |
atattgacactgataattttttagaaaatgtcataattcaatgtaattacgtgtgttggtgacacatgtcggacaccaggacccgccttcatcaagtgtc |
52158847 |
T |
|
| Q |
115 |
ggtgctatagaggtcactagcttaggttatatgtttaagggtttacttgaataagttgatttcataaggagttaacattagtgtttatgcatacaaatac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52158846 |
ggtgctatagaggtcactagcttaggttatatgtttaagggtttacttgaataagttgatttcataaggagttaacattagtgtttatgcatacaaatac |
52158747 |
T |
|
| Q |
215 |
ttcttcgagtttt |
227 |
Q |
| |
|
||||||||||||| |
|
|
| T |
52158746 |
ttcttcgagtttt |
52158734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 37496702 - 37496746
Alignment:
| Q |
19 |
ttgacactgataatttttt-agaaaatgtcataattcaatgtaat |
62 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
37496702 |
ttgacaccgataattttttgagaaaatgacataattcaatgtaat |
37496746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University