View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_6 (Length: 563)
Name: NF1490_low_6
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 166 - 554
Target Start/End: Original strand, 15241566 - 15241941
Alignment:
| Q |
166 |
tctttgatggagtgaatttttgacgtgtgttggattatcatgtgatttagagtaatttgaattcatagagtaggattaatcaaattgtttcaaataataa |
265 |
Q |
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| T |
15241566 |
tctttgatggagtgaatttttgatgtgtgttggattatcatgtgatttagagtaatttgaattcatagagtaggattaatcaaattgtttcaaataat-- |
15241663 |
T |
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| Q |
266 |
tttcgatgaattggttttaaagtggagaccactatgaggcactatctaatttattatcccttcttgttgttatatgataatgtgacgttaatgatgttct |
365 |
Q |
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| T |
15241664 |
-ttcgatgaattggttttaaagtggagaccactatgaggcactatctaatttat---cccttcttgttgttatatgataatgtgacgttaatgatgttct |
15241759 |
T |
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| Q |
366 |
tttgttgcagtaaatcgtttacaatattgctgtttttcaatactctctattagcataaaatgttgtcaaataggtctatatatagtggtgtggtgtgtag |
465 |
Q |
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| T |
15241760 |
tttgttgcagtaaatcgtttacaatgttg---ttttgcaatactctctattagcacaaaatgttgtcaaataggtctata----gtggtgtggtgtgtag |
15241852 |
T |
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| Q |
466 |
ttaaatttgaacaaactatcattttccgtgatctgcatttgaaaacactgatattttgttctgtgttttggtcgagtcctttgcttctc |
554 |
Q |
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| T |
15241853 |
ttaaatttgaacaaactatcattttccgtgatctgcatttgaaaacactgatattttgttctgtgttttggtcaagtcttttgattctc |
15241941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 517
Target Start/End: Original strand, 34227386 - 34227444
Alignment:
| Q |
459 |
tgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttgaaaacactgat |
517 |
Q |
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| T |
34227386 |
tgtgtagtgaaatttgaacaaactgttattttccatgatcggcaattgacaacactgat |
34227444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 507
Target Start/End: Original strand, 33651744 - 33651792
Alignment:
| Q |
459 |
tgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttga |
507 |
Q |
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| T |
33651744 |
tgtgtagctaaatttgaacaaactactattttctgtgatctgcaattga |
33651792 |
T |
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