View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_60 (Length: 233)
Name: NF1490_low_60
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_60 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0301 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 38739154 - 38739386
Alignment:
| Q |
1 |
gaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattcccaagcggttatatttaacttttctgtt |
100 |
Q |
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| T |
38739154 |
gaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagataagaaaattcccaagcggttatatttaacttttctgtt |
38739253 |
T |
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| Q |
101 |
atttaaaaaatttacaagtgggatgagtaggacnnnnnnnntcacaagagtttgtaggataaaaaatttacaagtattttcgttgaatttgcacgacaag |
200 |
Q |
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| T |
38739254 |
atttaaaaaatttacaagtgggatgagtaggacaaaaaaaatcacaagagtttgtaggataaaaaatttacaagtattttcgttgaatttgcgcgataag |
38739353 |
T |
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| Q |
201 |
tttatcgtgcgatatagcacttctctagtccaa |
233 |
Q |
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| T |
38739354 |
tttatcgtgcgatatagcacttctctagtccaa |
38739386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 38151695 - 38151918
Alignment:
| Q |
1 |
gaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattcccaagcggttatatttaacttttctgtt |
100 |
Q |
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| T |
38151695 |
gaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattcccaagcggttata-ttaacttttctgtt |
38151793 |
T |
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| Q |
101 |
atttaaaaaatttacaagtgggatgagtaggacnnnnnnnntcacaagagtttgtaggataaaaaatttacaagtattttcgttgaatttgcacgacaag |
200 |
Q |
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| T |
38151794 |
atttaaaaaatttacaagtgggatgagtaggacaaaataaatcacaagagtttgtaggataaaaaatttacaagtattttcgttgaatttgcgcgacaag |
38151893 |
T |
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| Q |
201 |
tttatcgtgcgatatagcacttctc |
225 |
Q |
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| T |
38151894 |
tttatcgtgcgatatagcacttctc |
38151918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 29059477 - 29059701
Alignment:
| Q |
1 |
gaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattcccaagcggttatatttaacttttctgtt |
100 |
Q |
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| T |
29059477 |
gaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattctcaagcggttatatttaacttttctgtt |
29059576 |
T |
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| Q |
101 |
atttaaaaaatttacaagtgggatgagtaggacnnnnnnnntcacaagagtttgtaggataaaaaatttacaagtattttcgttgaatttgcacgacaag |
200 |
Q |
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| T |
29059577 |
atttaaaaaatttacaagtgggaagagtaggacaaaaaaaatcacaagagctcgtaggataaaaaaattacaagtattttcgttgaatttgcgcgacaag |
29059676 |
T |
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| Q |
201 |
tttatcgtgcgatatagcacttctc |
225 |
Q |
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| T |
29059677 |
tttatcgtgcgatatagcacttctc |
29059701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0301 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0301
Description:
Target: scaffold0301; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 8627 - 8851
Alignment:
| Q |
1 |
gaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattcccaagcggttatatttaacttttctgtt |
100 |
Q |
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| T |
8627 |
gaatagaatgaagggtccttattatgatcaactagatgaagaaattccaccgtcaaaaagaaaagaaaattctcaagcggttatatttaacttttctgtt |
8726 |
T |
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| Q |
101 |
atttaaaaaatttacaagtgggatgagtaggacnnnnnnnntcacaagagtttgtaggataaaaaatttacaagtattttcgttgaatttgcacgacaag |
200 |
Q |
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| T |
8727 |
atttaaaaaatttacaagtgggaagagtaggacaaaaaaaatcacaagagctcgtaggataaaaaatttacaagtattttcgttgaatttgcgcgacaag |
8826 |
T |
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| Q |
201 |
tttatcgtgcgatatagcacttctc |
225 |
Q |
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| T |
8827 |
tttatcgtgcgatatagcatttctc |
8851 |
T |
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