View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1490_low_8 (Length: 488)
Name: NF1490_low_8
Description: NF1490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1490_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 119 - 471
Target Start/End: Original strand, 40666351 - 40666704
Alignment:
| Q |
119 |
atgatagttgcagtattaataagggttttcaatttcctcaaattttcagttgctcatttacgattttactctgtaggttgatttggagagaatttcaaaa |
218 |
Q |
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| T |
40666351 |
atgatagctgcagtattaataaggtttttcaatttcctcaaattttcagttgctcatttacgattttactctgtaggttgatttggagagaatttcaaaa |
40666450 |
T |
|
| Q |
219 |
aatactcatgggtatgttggtgctgaccttgctgctctttgcactgaagctgctctccaatgcattagggagaagatggacgtcattgacttagaggatg |
318 |
Q |
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| T |
40666451 |
aatactcatgggtatgttggtgctgaccttgctgctctttgcactgaagctgctctacaatgcattagggagaagatggacgtcattgacttagaggatg |
40666550 |
T |
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| Q |
319 |
agactattgatgctgaaatactaaattccatggcagttacaaatgagcatttgcatactgcacttggaacaagcaacccatcagctctacgcgaaactgt |
418 |
Q |
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| T |
40666551 |
agactattgatgctgaaatactaaattccatggcagttacaaatgagcatttgcatactgcacttggaacaagcaacccatcagctctacgcgaaactgt |
40666650 |
T |
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| Q |
419 |
tag-ttttttatacgactcctatatttagaaatcattagttgattacttcatca |
471 |
Q |
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| T |
40666651 |
tagtttttttatacgactcctatatttagaaatcattagttgattacttgatca |
40666704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 144 - 471
Target Start/End: Complemental strand, 40723629 - 40723301
Alignment:
| Q |
144 |
ttttcaatttcctcaaattttcagttgctcatttacgattttactctgtaggttgatttggagagaatttcaaaaaatactcatgggtatgttggtgctg |
243 |
Q |
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| T |
40723629 |
ttttcgatttcctcaaattttcattcgcacatttacgacttt-ctctgtaggttgatttggagagaatttcaaaagatactcatgggtatgttggtgctg |
40723531 |
T |
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| Q |
244 |
accttgctgctctttgcactgaagctgctctccaatgcattagggagaagatggacgtcattgacttagaggatgagactattgatgctgaaatactaaa |
343 |
Q |
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| T |
40723530 |
accttgctgctctttgcactgaagctgctctacaatgcattagggagaagatggacgtcattgacttagaggatgagactattgatgctgaaatactaaa |
40723431 |
T |
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| Q |
344 |
ttccatggcagttacaaatgagcatttgcatactgcacttggaacaagcaacccatcagctctacgcgaaactgtta--gttttttatacgactcctata |
441 |
Q |
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||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| ||||| | | ||||||||||| |
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| T |
40723430 |
ttctatggcagttacaaatgagcatttccataccgcacttggaacaagcaacccatcagctctacgtgaaactgttagtgttttctttccgactcctata |
40723331 |
T |
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| Q |
442 |
tttagaaatcattagttgattacttcatca |
471 |
Q |
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| T |
40723330 |
tttagaaatcattagttgattacttgatca |
40723301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 225 - 370
Target Start/End: Complemental strand, 41092540 - 41092395
Alignment:
| Q |
225 |
catgggtatgttggtgctgaccttgctgctctttgcactgaagctgctctccaatgcattagggagaagatggacgtcattgacttagaggatgagacta |
324 |
Q |
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| T |
41092540 |
catggctatgttggtgctgatttagctgctttgtgtaccgaagcagcacttcaatgcatcagggaaaaaatggacgtgattgacttggaagatgagacaa |
41092441 |
T |
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| Q |
325 |
ttgatgctgaaatactaaattccatggcagttacaaatgagcattt |
370 |
Q |
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| T |
41092440 |
ttgatgctgaaatattgaactccatggcagtgacaaatgagcattt |
41092395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 225 - 415
Target Start/End: Original strand, 27977761 - 27977951
Alignment:
| Q |
225 |
catgggtatgttggtgctgaccttgctgctctttgcactgaagctgctctccaatgcattagggagaagatggacgtcattgacttagaggatgagacta |
324 |
Q |
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||||| |||||||||||||| | |||||| | || ||||| ||||| || || ||||| || ||||| ||||| || |||||| |||| ||||| || | |
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| T |
27977761 |
catggttatgttggtgctgatttagctgctttgtgtactgaggctgcacttcagtgcatcagagagaaaatggatgtgattgacctagaagatgaaacca |
27977860 |
T |
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| Q |
325 |
ttgatgctgaaatactaaattccatggcagttacaaatgagcatttgcatactgcacttggaacaagcaacccatcagctctacgcgaaac |
415 |
Q |
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|||||||||| ||||| || || ||||| || |||||||| ||||| ||| ||||||||| ||||||| || || ||||| || ||||| |
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| T |
27977861 |
ttgatgctgagatacttaactcaatggcggtcacaaatgaacatttcagtaccgcacttggatcaagcaatccttctgctctccgtgaaac |
27977951 |
T |
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