View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14910_low_1 (Length: 300)
Name: NF14910_low_1
Description: NF14910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14910_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 8149210 - 8149481
Alignment:
| Q |
18 |
aaatcgtaaggtaaatatagtctaacgnnnnnnnttgtttcaatgtggctttggtcgtactacatttcatgctcttacataactttgtttacactgcatg |
117 |
Q |
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| T |
8149210 |
aaatcgtaagttaaatatagtctaacgaaaaaaattgtttcaatgtggctttggtcgtactacatttcatgctcttacataacattgtttacactgcatg |
8149309 |
T |
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| Q |
118 |
ttcttaaacagatatttaattattttcgtgaggaaatatttacttaattcttgaatagataaatatcaatattgtaggaaaaattatttagatattatgt |
217 |
Q |
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| T |
8149310 |
ttcttaaacagat-ttaattttttttcgtgaggaaatatttacttaattcttgaatagataaatatcaatattgtaggaaaaattatttagatattatgt |
8149408 |
T |
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| Q |
218 |
agtgttgagatgagttctagaactcccaattaaaatgaaattagaatgaagtattgtgtgaatgtgtagaatt |
290 |
Q |
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| T |
8149409 |
agtgttgagatgaggtctacaactcccaattaaaatgaaattagaatgaagtattgtgtgaatgtgtagaatt |
8149481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 151 - 268
Target Start/End: Original strand, 8158527 - 8158646
Alignment:
| Q |
151 |
aaatatttacttaattcttgaatagataaatatcaatattgtaggaaaaa--ttattta-gat-attatgtagtgttgagatgagttctagaactcccaa |
246 |
Q |
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| T |
8158527 |
aaatttttacttgatctttgaatagataaatatcaatattgtaggaaaaaaattatttttgattattatgaagtattaagatgagttctagaaccccaaa |
8158626 |
T |
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| Q |
247 |
ttaaaatgaaattagaatgaag |
268 |
Q |
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| T |
8158627 |
--aaaatgaaattagaatgaag |
8158646 |
T |
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