View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14911_low_1 (Length: 324)
Name: NF14911_low_1
Description: NF14911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14911_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 88 - 299
Target Start/End: Original strand, 51946430 - 51946635
Alignment:
| Q |
88 |
aaaaaatacctacgataagcaggtaaatatccgcattgttggctttgcacctaggtttgaataattacctgcaaacggtatggacaatagatgtagatat |
187 |
Q |
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| T |
51946430 |
aaaaaatacctacgataagcacgtaaatatccgcattattggctttgcacctaagtttgaataattacctgcaaacggtatggactatagatgcaaatat |
51946529 |
T |
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| Q |
188 |
aggtactgtggtatccagcccgccatggccatagtctgcacattatatatactataacaataattttatgtgatattgaaattagttcttaaatatttat |
287 |
Q |
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| T |
51946530 |
agatactctggtgtccagccc------gccatagtctgcacattatatatactataacaataattttatgtgatattaaaattagttcttaaatatttat |
51946623 |
T |
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| Q |
288 |
tgtaatatgcac |
299 |
Q |
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| T |
51946624 |
tgtaatatgcac |
51946635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 51940190 - 51940278
Alignment:
| Q |
1 |
cacgaaaaaacacaagtaacctgctcgagtgcggcttgcttagcaaaaaatgaaaggaaagaagtagggttcgcgagcaaagtaactaaaaaa |
93 |
Q |
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| T |
51940190 |
cacgaaaaaacacaagtaacctgctcgagtgcggcttgcttagcaaaaaatgaaaggaaagaa----ggttcgcgagcaaagtaactaaaaaa |
51940278 |
T |
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